SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29859

Length: 1321 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29859

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] gb\|AAM19803.1\| At1g74320/F1O17_1 [Arabidopsis thaliana] gb\|AAM98234.1\| putative choline kinase [Arabidopsis thaliana] gb\|AAP42750.1\| At1g74320 [Arabidopsis thaliana] gb\|AEE35577.1\| protein ki	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Putative choline kinase	-	-	1.659e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Choline kinase.	EC:2.7.1.32	-	3.65e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerophospholipid metabolism	00564		3.65e-17	%
Sma3	Metabolic pathways	01100		3.65e-17	%
Sma3	Ethanolamine kinase.	EC:2.7.1.82	-	1.835e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerophospholipid metabolism	00564		1.835e-08	%
Sma3	Metabolic pathways	01100		1.835e-08	%

Source	Gene names
Sma3	AT4g09760; At1g71697; At1g74320; At4g09760; CK; F14O23.8; F17A8.110; F1O17.1; F26A9.3; GSVIVT00002042001; GSVIVT00008974001; OJ1014_C08.11; OJ1741_B01.3; Os01g0183000; Os01g0717000; OsI_00666; OsI_03517; OsI_20768; OsJ_00644; OsJ_03257; OsJ_19343; P0489A0

Source	GOs	Term	Type	Identity
Sma3	choline kinase activity	GO:0004103	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Choline/ethanolamine kinase	IPR002573	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Choline kinase, N-terminal	IPR007521	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G74320.1	Protein kinase superfamily protein chr1:27941192-27942903 FORWARD LENGTH=350	52%
RefSeq	Arabidopsis thaliana	NP_177572.2	protein kinase domain-containing protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002303949.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2C4

Fln msg:

Fln protein: MASVQCVSSALCAQEEESRKGKLSREAESALQSLALSWGDAIGANEMETVPLNGGMTNEIFQCSWKNREDEKPRKVLVRIYGAESANVFFDREYEIRAFESISRLGYGPRLLASFPNGRIEEFLNARTLSAPDLKNPEISAKIAAKLWEFHHLDIPGPREPKLWMRLRNWLSKALEVCHDNEVAEFQLDCMGEEIDDLEVMLSEDQRIGFCHNDLQYANVMFNDDDKSVTLIDYDCSSYDYVAFDIANHFCEMAGNYHSSQPHILDYNKYPDLEERERFVKKYLNASGKTIKDNEVEQLLEYIEKYTLVCHIQWSLWSLISSHVNNIEFEFVEYAIQRFQQYQWLKAKLKVESTYLPCKKDWDFTIDFISQRDTNMHYDCQIIEW*

Protein Length: 387

Fln nts: GGGCAACGGATTGGTGCTTCTCTGGACTTTTACGCGATCCATTTTTCCCTGAGTTATATAGAGTTTGTCATTTTATCC_-_ATGGCCTCTGTGCAATGCGTGAGTAGCGCGCTCTGCGCACAGGAAGAAGAGAGCCGGAAAGGGAAGTTATCCAGAGAAGCCGAGAGCGCTTTGCAATCCCTCGCTCTCAGTTGGGGGGACGCCATCGGCGCAAACGAAATGGAAACTGTGCCTCTTAACGGGGGCATGACGAACGAGATTTTCCAGTGCAGTTGGAAGAACAGAGAGGACGAGAAGCCCAGGAAGGTACTCGTTCGAATCTACGGAGCAGAGAGCGCGAATGTGTTTTTCGATCGGGAATATGAGATTCGGGCGTTTGAGTCCATTTCCAGGCTTGGCTACGGACCCCGTCTCCTCGCTTCCTTCCCCAACGGTCGCATTGAGGAGTTTCTTAATGCCAGGACACTGTCAGCCCCTGATCTGAAAAATCCAGAAATATCCGCTAAAATAGCAGCAAAGTTATGGGAGTTTCATCATCTTGACATACCAGGTCCCCGAGAGCCGAAGCTCTGGATGCGCCTCAGGAACTGGTTGAGTAAAGCACTGGAAGTATGCCATGACAACGAGGTTGCCGAATTCCAGCTTGACTGTATGGGAGAGGAGATCGATGATTTGGAAGTGATGTTATCGGAGGATCAAAGAATTGGGTTCTGTCACAATGACTTGCAGTATGCTAATGTCATGTTTAATGATGACGATAAATCTGTGACGTTGATTGATTATGATTGTTCCAGTTATGATTATGTGGCATTCGATATAGCAAATCATTTTTGTGAGATGGCTGGAAATTATCATTCAAGCCAACCTCATATATTAGATTATAACAAATATCCAGATCTTGAAGAACGTGAAAGATTTGTAAAAAAATATTTAAATGCATCTGGCAAAACGATCAAAGACAATGAAGTTGAGCAACTTTTAGAATACATTGAAAAATATACCTTGGTCTGCCATATACAGTGGAGCTTATGGAGTCTTATTTCGAGTCATGTGAACAATATAGAATTTGAATTTGTGGAATATGCAATACAGAGGTTTCAACAATATCAATGGTTAAAAGCTAAATTAAAAGTTGAATCTACATATTTACCTTGTAAAAAGGATTGGGATTTTACCATAGATTTTATATCACAACGGGATACCAATATGCATTATGATTGTCAAATCATAGAATGGTAG___GAAGATTGTGATTTAAATTACGCAATAATCATGTAATATCATTTTATTTAAAATATCATTGGTGAACTATTAGTTTGTTGTAACG

Fln Alignment:

Contig29859___RKGKLSREAESALQSLALSWGDAIGANEMETVPLNGGMTNEIFQCSWKNREDEKPRKVLVRIYGAESANVFFDREYEIRAFESISRLGYGPRLLASFPNGRIEEFLNARTLSAPDLKNPEISAKIAAKLWEFHHLDIPGPREPKLWMRLRNWLSKALEVCHDNEVAEFQLDCMGEEIDDLEVMLS-EDQRIGFCHNDLQYANVMFNDDDKSVTLIDYDCSSYDYVAFDIANHFCEMAGNYHSSQPHILDYNKYPDLEERERFVKKYLNASGKTIKDNEVEQLLEYIEKYTLVCHIQWSLWSLISSHVNNIEFEFVEYAIQRFQQYQWLK-AKLKVESTYLPCKKDWDFTIDF-----ISQRDTNMHYDCQIIEW
A9P2C4_______________RSSILPREAESALQALALNWVDVIDAKKMEITPLTGGMTNDIFKCCWQTGDGGNPRKVLVRIYGDARANVFFDREYEIRAFECISRLGQGPRLLGSFPTGRIEEFLDARTLSPPDLKNPEISAKIAAKLWEFHHLDIPGPRQPNLWMRLRKWLGTALALCPNVEVAGFRLECIEDEINYLEKMVSREGESVGFCHNDLQYANMMFQDEDKCLTIIDYDCSNYDPIAFDIANHFNEMAGNYHSDTPHILDYSKYPDYEERQRFVKEYLKSSRKMVRDGEVEKLLKHIEKYTLVSHVHWSLWSIISKHVNDMDFDYMDYAKQRFQRYRLLKPLLLNVESPYSSNGADWNCTRDFHNSTKSSELNANMHDACHFTKF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1292	95		4		1.0
1322	84	2			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain