SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29674

Length: 1413 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29674

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	vesicle transport v-SNARE 11-like [Solanum tuberosum]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport v-SNARE, N-terminal	IPR007705	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G39510.1	VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1 Vesicle transport v-SNARE family protein chr5:15822035-15823591 FORWARD LENGTH=221	67%
RefSeq	Arabidopsis thaliana	NP_198767.1	vesicle transport v-SNARE 11 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002306052.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LND1

Fln msg:

Fln protein: MSEVFEGYERQYCELSANLSRKCTSAALLNGEQKKQKITELKSGLDEAEALIRKMDLEARSLQPSLKATFLAKLREYKSDLNNLKRDVKKTSSPIDTQAARDELLESGMGDTLMASADQRGRLLNSTERLNQTSDRIKEGRRTLLETEDLGVSILHDLHQQRQSLLHAHDTLHGVDDNIGKSRKILTSMTRRMSRNKYIIGGLIGVLVIVIAVIVYFKVAHK*

Protein Length: 224

Fln nts: TTTCTATGTGTTTGGAGGTGGAGAATTTGAGAACAGATAAATGTAAAGGAACTGCAAGAGGAGTTTAATTTAAAATTACAATTGATCAACTGGCAGCAGCAGTATTTTTCGCGTTTATGGTCACTTTCCTTAATTTTACTTTCCCACCATTTGTCACAAAAGAAGGCCAACAGAACAGAGCACGGCAGGATATTCGTTTCCAAGTAGAATTCCCAGGTGTGACCGGGGAGATCGGCGGATTCGATCGATTGAGCTCTCCGATTGATCCAGAATTTGTTTTGGATTTGCTGTTTTAAGAGGCGGGGAGA_-_ATGAGTGAAGTATTTGAAGGTTATGAGCGGCAATATTGCGAGCTCTCTGCAAATCTTTCACGGAAATGCACCTCTGCGGCTCTTCTCAATGGAGAGCAAAAGAAACAAAAAATTACGGAGCTGAAATCTGGATTGGACGAAGCAGAAGCTTTGATCCGGAAAATGGACCTTGAAGCAAGAAGTTTGCAGCCAAGTCTGAAGGCTACTTTTCTTGCAAAATTAAGGGAGTATAAGTCAGATTTGAATAACTTAAAAAGAGATGTTAAGAAGACTTCATCTCCTATTGATACCCAGGCCGCGAGAGATGAGCTACTTGAATCAGGGATGGGTGATACATTAATGGCATCAGCAGATCAGAGGGGTAGATTATTGAATTCCACAGAGAGACTTAACCAGACAAGTGACCGGATCAAGGAAGGCAGGAGGACCCTTCTGGAGACAGAAGACCTTGGTGTGTCCATTCTTCATGACCTTCATCAGCAACGACAATCACTTCTGCATGCACATGATACGCTTCATGGAGTGGATGACAATATTGGTAAGAGCAGAAAGATTCTCACTTCAATGACAAGGAGGATGAGCCGAAACAAATATATTATAGGTGGCCTTATAGGTGTCCTGGTTATAGTGATCGCTGTGATTGTTTACTTTAAGGTTGCCCACAAGTAG___GTTTGAGAATCTTATTAATTTTTGTGTGGTGTGTGTATTAAAAATATATCTACCAAAAGTGAATAATGCTTCTGAATCTAGGGGGTAATTGTGAGTTATGACTTCAATCTGAAACATCCTGTTCTAAGTTTGTATTCTACTCGAAACTCATATCAGACTTCATATGTTGTGGAACATTCTGCATGCTGCACAGTTCTGGATTGTACTGAATTCTTTATGGTCCATCCATATCAATGGCAACTGTGTTTTACAAATATCAACGATGATGTCACGAAGGGCTTTGATGTTTTAGGTGTCAATGACAGTTCTGATGATTAAACTTTCAAATTCTGAACAATATTCATTTTCTTTGATTTCTCATTTATGCTTGAAGATGTTCCAAGTTACAAGGAACATTTGTTGACTAATTGACTAATTGCATTGTGCTTGCTTAGCT

Fln Alignment:

Contig29674___MSEVFEGYERQYCELSANLSRKCTSAALLNGEQKKQKITELKSGLDEAEALIRKMDLEARSLQPSLKATFLAKLREYKSDLNNLKRDVKKTSSPIDTQAARDELLESGMGDTLMASADQRGRLLNSTERLNQTSDRIKEGRRTLLETEDLGVSILHDLHQQRQSLLHAHDTLHGVDDNIGKSRKILTSMTRRMSRNKYXXXXXXXXXXXXXXXXXYFKVAHK
B8LND1_______________MSEVFEGYERQYCELSANLSRKCTSAALLNGEQKKQKLSELKTGLDEAEALIRKMDLEARSLQPSLKATFLAKLREYKSDLNNLKRDVKKTSSPIDSQAARDELLESGMGDTLMASADQRGRLLNSTERLNQTSDRIKDGRRTLLETEDLGVSILHDLHQQRQSLLHAHDTLHGVDDNIGKSRKILTSMTRRMSRNKYIIGGLIGVLVVVIAVIVYFKIAHK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1107	80			20	0.995493
1234		8	4	87	1.0
1236	92			7	0.999532
1237	92			7	0.999664
1241	3	7		88	0.999079
1317	14			85	0.993533
1318	14			85	0.993533
1319	14	85			0.993533
1327			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain