SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29639

Length: 852 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene29639 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] ref\|NP_850700.1\| bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana] emb\|CAB88360.1\| putative p	-	-	5.0e-27	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Lipid binding protein	-	-	4.587e-07	-

Source	Gene names
Sma3	At3g53980; F5K20_280; GSVIVT00018370001; GSVIVT00021412001; OJ991214_12.12; Os04g0415900; OsI_15839; OsJ_14757; POPTRDRAFT_770285; POPTRDRAFT_820375; POPTRDRAFT_825296; RCOM_1483220; VITISV_021194; VITISV_033735;

Source	GOs	Term	Type	e value	Identity
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-
Sma3	lipid transport	GO:0006869	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR003612	-	0.0	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53980.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein chr3:19987760-19988203 REVERSE LENGTH=114	6.0e-35	57%
RefSeq	Arabidopsis thaliana	NP_850700.1	bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana]	8.0e-35	57%
RefSeq	Populus trichocarpa	XP_002315191.1	predicted protein [Populus trichocarpa]	2.0e-33	58%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
821	1		86	12	1.0
841		90		9	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain