SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29606

Length: 2710 nt

UniGene Fasta

>sp_v3.0_unigene29606
GTCATCTCAGTTTACAATTACCATTGATTTGGCGTTCCTGTGCAATTGCTAGTATATTATACTGTATTACTTTACAAAATTTATATAAATTGAAGGAATGTAGAAACCGAATGAAGTTTGAAGAGCGGAATGCATACTCTGCGTGGCAGGCACTACTGAGAGAACCAGGCAAATATTTTGAAAGGAGGCCAATTGCCAAGAGTGAAGTTCTGTGTACAGTAGACAGACCTTACCGAAGTAAATAAGAAATGATTATTGAGTGTTAGCGGGTATTTGCAGAGAAGAAGATTCACAAATTGTGTTTGATCAGCACACGAATGGAGGGAAGATTTAGTCATTCGAAATACTGAAATGTGATTGACCATTCCAAAACCTGTACTATGATCCCAGTTAAAGGCTTTGTATAAGGAGGTGTACAAAATAGAATGACATGTGCCAACAAATCGTAAGCAGGAGGAAGGATTTCATATACGGTTAATGCTTGCAGAAGTGGCAAACTAGATCCTGTTAAACGACATAAGAGAAGACAGAAGCATGAAGACGTTGTTCTAGGGTAAATACACCCCATAGAACATGGAGAACTTTTTTGAACGTGGAAGGTAGAGGTACATTTATATGCCCTAGAATGCATGAATGCCATATCAAATGATACAGCATTAAGTTTCAGTCAAAAAGGAAAAAAAAGAAAACACCTACGCGGAGCTAGACGGACCTATATGTGAAGAAGCAAAAGCTCTAATTACAGAGTATAGGTATCCATCCAAAGCAGAGAGTGGCTTATGTTCAACATTACAGTGGAAGAATATTCACTTTTCATGATATATCAATGGAGTCCTATGGTACTTACCTCAATCCTCACAAGCAGATTAAAGAAGATTTTGTCAGCAACTTGAATGGTACATCAATTCTTGAAATTGCTGCCCTCACTGCAATTATGCCTGTTCTTATCCTCCTGCGACAATGGAATGTGTTCCAACTCAGATGGGACCAAGGTGGATCTACCAATATTCAAATGGAGGAGCATAGCAGCAGGAGTAAACATTTGAAAGATTGGAGGAATTATGCATCCTCTTTGATTGTTGATTTCTTTCTCGTTGTTTTACCAATGCTTTCTTGCTTAACAATTATGGCAGACCAGACTTACATTTGTTCTATATGCTTGATGCTTCTTGTACTGTTTAGAATGTTTTTACACAAGGTTGTTGTCACATTCTGAAATTTCAACCCATACAGAGAGTAGTACTTTGTCTGTGTCTTATTGGAGAAAAAGCCTCTCATCATATCGATTTGCAATGATGCTGGTGACATGCTTGTCAATCCTGTCTGTGGACTTCAAAATATTTCCCAGGCGATTTGCTAAGACAGAAACGTATGGTACAGGATTAATGGATCTCGGGGTTGGATCTTTTGTAGTTGCAAATGCACTAGTTTCAAAACAGGCACGCAACATTGATTCGGTAAAGCGTGGAGGTATACTTAAAAGTGTAAGCCCATTACTCTTGATTGGATTTGCTCGAATGGTTCTTACTAAGGGGGTTGACTACCAGGTCCATGTTGGGGAATATGGTGTACACTGGAATTTCTTTTTCACTCTTGCAGCAGTGGCCATTGTGACATCAATAATCAATATTCATCCCCAATACTGTGGCTTCTTTGGATGTGCAATTCTCACAGTTTATCAAGCAGTCCTGTTGTGTGGATTAAATCGTTACCTCATTTCAGATCAGAGGGGTGCAAATATCATTAGTCTGAACAAAGAGGGCATCTTCAGTTTATTTGGATATTGGGGCTTATACCTTGTCAGTGTCAACTTAGGCTATCATCTCTTCTTCCTAAAGAAACCCATTAGTTCTAGAGTAGCTTCAATTGGAGGGAAATCAAGTATTGCAATCGAAGTTTGGCTGCTTGATGGTTTCCTTTGGGTGCTAACAATCTTTTTGGATAAGTTTGTAGAGAAAATTTCTCGTCGCATGTGCAATTTAGCATATGTAACTTTTGTTCTGGCACAAAACTTTGAGGTTCTTGGGATGCTTATGCTCTCAGATTTGGTCCCCACAAGAAAATCATTGGTCCTTGAGGAAGTCTTTGATCAGAATATGCTTGTGACTTTCCTCCTGGCAAATATATTAACGGGCCTTGTAAATGTGTCGATGACTACTGTTTTTGTTTCTCCATTCCTAGCCTACTGCACTTTACTTTTATATGCAGTGATTTTGATTTCAGGGGTCGCAGTTCTGAAGTTTCAGAATTTAAGACTAAAATTCTGGTAGACCGAATCAATTCATGTTTAGTTGAAATAATAAATTTTATAGTATGCAGTGAGAAAACTCTTGATGATACTGGCTTCTTTAAAGGAACGTTGTTGTAAGGTTGTGAGAAAATGCATGAAGTGCATTACATCGTTTCTATCATTGAGGGATTCAGAGAATTACAGTTCTGCGTTTTATTACATCAAGGCCTATTTGTTAGGCTTCATTTCAAAATAAATTTGACTTTGGTCATCCTTCATGCGGGAATCATTGCATGGCTATATCTTAATTCCAGAATAAGTTTTGTTAACAATAACGAACTTAGTGATTGTAGTTTAGGGTTCTCCATAAAGTGACAGGCAACGTGATATATATGCACATGTATCATGTCTTTCATTGATGCACACATTTCAGTGCATGTGAGCAACATTAAAACATTATTGAATTTTCTTCCTTGCATA

Ace file of the UniGene sp_v3.0_unigene29606

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GPI-anchored wall transfer protein 1 [Aspergillus oryzae RIB40] ref\|XP_002373393.1\| GPI anchor biosynthesis protein Gwt1, putative [Aspergillus flavus NRRL3357] sp\|Q2UQH4.1\|GWT1_ASPOR RecName: Full=GPI-anchored wall transfer protein 1 dbj\|BAE56191.1\| unna	-	-	0.0	37%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	40%

Source	Gene names
Sma3	At4g17910; GSVIVT00015748001; LOC_Os03g26090; OSJNBa0013O08.4; OSJNBb0048D20.5; Os03g0378200; OsI_11800; OsJ_11046; PHYPADRAFT_233732; POPTRDRAFT_852811; RCOM_1109320; T6K21.90;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transferase activity, transferring acyl groups	GO:0016746	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GWT1	IPR009447	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17910.1	transferases, transferring acyl groups chr4:9951322-9953689 REVERSE LENGTH=434	56%
RefSeq	Arabidopsis thaliana	NP_193525.5	transferase [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002304339.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SNV8

Fln msg: Separated hits, possible frame ERROR between 1144 and 1272,

Fln protein: MESYGTYLNPHKQIKEDFVSNLNGTSILEIAALTAIMPVLILLRQWNVFQLRWDQGGSTNIQMEEHSSRSKHLKDWRNYASSLIVDFFLVVLPMLSCLTIMADQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSYRFAMMLVTCLSILSVDFKIFPRRFAKTETYGTGLMDLGVGSFVVANALVSKQARNIDSVKRGGILKSVSPLLLIGFARMVLTKGVDYQVHVGEYGVHWNFFFTLAAVAIVTSIINIHPQYCGFFGCAILTVYQAVLLCGLNRYLISDQRGANIISLNKEGIFSLFGYWGLYLVSVNLGYHLFFLKKPISSRVASIGGKSSIAIEVWLLDGFLWVLTIFLDKFVEKISRRMCNLAYVTFVLAQNFEVLGMLMLSDLVPTRKSLVLEEVFDQNMLVTFLLANILTGLVNVSMTTVFVSPFLAYCTLLLYAVILISGVAVLKFQNLRLKFW*

Protein Length: 483

Fln nts: GTCATCTCAGTTTACAATTACCATTGATTTGGCGTTCCTGTGCAATTGCTAGTATATTATACTGTATTACTTTACAAAATTTATATAAATTGAAGGAATGTAGAAACCGAATGAAGTTTGAAGAGCGGAATGCATACTCTGCGTGGCAGGCACTACTGAGAGAACCAGGCAAATATTTTGAAAGGAGGCCAATTGCCAAGAGTGAAGTTCTGTGTACAGTAGACAGACCTTACCGAAGTAAATAAGAAATGATTATTGAGTGTTAGCGGGTATTTGCAGAGAAGAAGATTCACAAATTGTGTTTGATCAGCACACGAATGGAGGGAAGATTTAGTCATTCGAAATACTGAAATGTGATTGACCATTCCAAAACCTGTACTATGATCCCAGTTAAAGGCTTTGTATAAGGAGGTGTACAAAATAGAATGACATGTGCCAACAAATCGTAAGCAGGAGGAAGGATTTCATATACGGTTAATGCTTGCAGAAGTGGCAAACTAGATCCTGTTAAACGACATAAGAGAAGACAGAAGCATGAAGACGTTGTTCTAGGGTAAATACACCCCATAGAACATGGAGAACTTTTTTGAACGTGGAAGGTAGAGGTACATTTATATGCCCTAGAATGCATGAATGCCATATCAAATGATACAGCATTAAGTTTCAGTCAAAAAGGAAAAAAAAGAAAACACCTACGCGGAGCTAGACGGACCTATATGTGAAGAAGCAAAAGCTCTAATTACAGAGTATAGGTATCCATCCAAAGCAGAGAGTGGCTTATGTTCAACATTACAGTGGAAGAATATTCACTTTTCATGATATATCA_-_ATGGAGTCCTATGGTACTTACCTCAATCCTCACAAGCAGATTAAAGAAGATTTTGTCAGCAACTTGAATGGTACATCAATTCTTGAAATTGCTGCCCTCACTGCAATTATGCCTGTTCTTATCCTCCTGCGACAATGGAATGTGTTCCAACTCAGATGGGACCAAGGTGGATCTACCAATATTCAAATGGAGGAGCATAGCAGCAGGAGTAAACATTTGAAAGATTGGAGGAATTATGCATCCTCTTTGATTGTTGATTTCTTTCTCGTTGTTTTACCAATGCTTTCTTGCTTAACAATTATGGCAGACCAGACTTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTCTCATCATATCGATTTGCAATGATGCTGGTGACATGCTTGTCAATCCTGTCTGTGGACTTCAAAATATTTCCCAGGCGATTTGCTAAGACAGAAACGTATGGTACAGGATTAATGGATCTCGGGGTTGGATCTTTTGTAGTTGCAAATGCACTAGTTTCAAAACAGGCACGCAACATTGATTCGGTAAAGCGTGGAGGTATACTTAAAAGTGTAAGCCCATTACTCTTGATTGGATTTGCTCGAATGGTTCTTACTAAGGGGGTTGACTACCAGGTCCATGTTGGGGAATATGGTGTACACTGGAATTTCTTTTTCACTCTTGCAGCAGTGGCCATTGTGACATCAATAATCAATATTCATCCCCAATACTGTGGCTTCTTTGGATGTGCAATTCTCACAGTTTATCAAGCAGTCCTGTTGTGTGGATTAAATCGTTACCTCATTTCAGATCAGAGGGGTGCAAATATCATTAGTCTGAACAAAGAGGGCATCTTCAGTTTATTTGGATATTGGGGCTTATACCTTGTCAGTGTCAACTTAGGCTATCATCTCTTCTTCCTAAAGAAACCCATTAGTTCTAGAGTAGCTTCAATTGGAGGGAAATCAAGTATTGCAATCGAAGTTTGGCTGCTTGATGGTTTCCTTTGGGTGCTAACAATCTTTTTGGATAAGTTTGTAGAGAAAATTTCTCGTCGCATGTGCAATTTAGCATATGTAACTTTTGTTCTGGCACAAAACTTTGAGGTTCTTGGGATGCTTATGCTCTCAGATTTGGTCCCCACAAGAAAATCATTGGTCCTTGAGGAAGTCTTTGATCAGAATATGCTTGTGACTTTCCTCCTGGCAAATATATTAACGGGCCTTGTAAATGTGTCGATGACTACTGTTTTTGTTTCTCCATTCCTAGCCTACTGCACTTTACTTTTATATGCAGTGATTTTGATTTCAGGGGTCGCAGTTCTGAAGTTTCAGAATTTAAGACTAAAATTCTGGTAG___ACCGAATCAATTCATGTTTAGTTGAAATAATAAATTTTATAGTATGCAGTGAGAAAACTCTTGATGATACTGGCTTCTTTAAAGGAACGTTGTTGTAAGGTTGTGAGAAAATGCATGAAGTGCATTACATCGTTTCTATCATTGAGGGATTCAGAGAATTACAGTTCTGCGTTTTATTACATCAAGGCCTATTTGTTAGGCTTCATTTCAAAATAAATTTGACTTTGGTCATCCTTCATGCGGGAATCATTGCATGGCTATATCTTAATTCCAGAATAAGTTTTGTTAACAATAACGAACTTAGTGATTGTAGTTTAGGGTTCTCCATAAAGTGACAGGCAACGTGATATATATGCACATGTATCATGTCTTTCATTGATGCACACATTTCAGTGCATGTGAGCAACATTAAAACATTATTGAATTTTCTTCCTTGCATA

Fln Alignment:

Contig29606___KQIKEDFVSNLNGTSILEIAALTAIMPVLILLRQ-WNVFQLRWDQGGSTNIQMEEHSSRSKHLKDWRNYASSLIVDFFLVVLPMLSCLTIMADQTYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSYRFAMMLVTCLSILSVDFKIFPRRFAKTETYGTGLMDLGVGSFVVANALVSKQARNIDSVKRGGILKSVSPLLLIGFARMVLTKGVDYQVHVGEYGVHWNFFFTLAAVAIVTSIINIHPQYCGFFGCAILTVYQAVLLCGLNRYLISDQRGANIISLNKEGIFSLFGYWGLYLVSVNLGYHLFFLKKPISSRVASIGGKSSIAIE-------------VWLLDGFLWVLTIFLDKFVEKISRRMCNLAYVTFVLAQNFEVLGMLMLSDLVPTRKSLVLEEVFDQNMLVTFLLANILTGLVNVSMTTVFVSPFLAYCTLLLYAVILISGVAVLKFQNLRLKFW
A9SNV8_______________KRLKEEFVSNLEGTTMREIAAMSALFPAFLLLRQCWPESSVLKPETGSSE---EDSKSSMIRTKFWR----SILLDFLVIVVPAVACLTVLADWLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSYRFVMMLVTCMTILAIDFTVFPRRYGKTETYGTGLMDLGVGSFVVANALVSRQARNLPPSKYGGVLRNTSPLLLLGFIRLIVTKGVDYQEHVGEYGVHWNFFFTLAGVSLLTSLISIKSSWCGPLGITILAVYQIVLSSGLNVYLLSPQRGQGLLSLNKEGIASTFGYWGLYLISVHLGY---LLNSKQTNVVQTISPSSNIETEKKAVTLRRGVVVGIWVLDVFLWVLTVWADYFVERISRRTCNLSYVLFVLAQNFEVIGIFMLAEVLAPLREIAILNVFDRNMLPTFLLANLLTGLVNMSMYTIFVAPAKAVVVVMLYALTLVGLMGLVDVKKLKLKFW

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
668	5	16	5	72	1.0
1230	66		33		0.997452
1231		66	33		0.997452
1232	66		33		0.997452
1286	85	14			0.993533
1323			85	14	0.993533
1406		20		80	0.995493
1499	33			66	0.997452
1705	75		25		0.996473
2111		20		80	0.995493
2149	16			83	0.994512
2150		16	83		0.994512
2152		83		16	0.994512
2201			20	80	0.995493
2202			20	80	0.995493
2204			20	80	0.995493
2206		40		60	1.0
2207	60	40			1.0
2211	60			40	1.0
2214		40	60		1.0
2216		40		60	1.0
2218		40		60	1.0
2219	40			60	1.0
2387	36		63		1.0
2421	30		70		1.0
2445	30		70		1.0
2526			36	63	1.0
2615		66	33		0.997452
2618		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain