SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29579

Length: 1319 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29579

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Xyloglucan endotransglycosylase	-	-	4.824e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g65310; At2g18800; At3g23730; At4g03210; At4g14130; At4g25810; At4g25820; At4g28850; At4g30270; At4g30280; At4g30290; At5g13870; At5g48070; At5g57530; At5g57540; At5g57550; At5g57560; At5g65730; EXGT; EXGT-A4; EXGT-A5; EXGT-A6;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30270.1	MERI5B, MERI-5, XTH24, SEN4 xyloglucan endotransglucosylase/hydrolase 24 chr4:14819445-14820448 REVERSE LENGTH=269	62%
RefSeq	Arabidopsis thaliana	NP_194756.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002308092.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg:

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFSAATASSFDAAAEEAALESNQEQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK*

Protein Length: 275

Fln nts: ATCATCTACCATCAACAGCGACAATTTATCTCTTCTCTCGTTTCTGGAACTGCTGCTCTGCATCACAAACTCTTTTCCCAATCCTAATCGACATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACGCTTGACCGCTCTTCAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTCGAATTTCTGGGCAACCTGTCCGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAGCAGCAATTTTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATTATATTTTCTGTAGACGGGAGTCCTATTCGAGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAGAGCCAAGCAATGAGCGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGAGGTGGGCTTGTGAAGACCGATTGGACTAAAGCGCCTTTTGTTGCATCCTTCCGCAATTTCAGTGCTGCTACTGCTTCTTCTTTTGACGCCGCTGCAGAGGAGGCTGCTTTGGAATCGAACCAAGAGCAGAGGCTGGAGTGGGTGAGGAAGAACTACATGATCTACGATTACTGTGGAGACACCAAAAGATTCCCACAGGGACCGCCTCCCGAATGCAAATGA___ACCCTCAATTCAATTCCATTCCATTGAATTCAGCGAATGAATTCTTCTGGATACCTGACCCTTCCACCCATTCTTTCCTATTACATGATCTATTCTTTCATTCTTTTTCAGGCACACATGACCTATTCTTTCATTCTTTTTCAGGCACACATGACCTATTCTTTCATTCTTTTTCAGACACACAGAAAAAGAAACTTTCAATTATTCTTTCCTATTACATCTATTCTTTCATTCTTTGTCAGAAACACACAAACAGAAACGCATGTAACACAATCAATTCATTTTGGGTACTGGTAATACAAAATCGAGCTCGAGATTCTTTTGATGATTCAATGGCCACAACGTTTCCTTTATGGTTTTTCTGACAAACAGAAACGCATGTAACACAATCAA

Fln Alignment:

Contig29579___IDMDTPXXXXXXXXXXXXXXXXXNFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPIRVFKNRETELGKVDSNYHYPKSQAMSVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFXXXXXXXXXXXXXXXXXXXXXXQRLEWVRKNYMIYDYCGDTKRFPQGPPPECK
D5AED5_______________MDMYTPFLLLFLLLTFSAALVSSNFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNF-NAATSSSSDSAAEEALDSNQEQRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
629	80		20		0.995493
944		92	7		0.999664
961	50	50			1.0
1028	33			66	1.0
1030	41	58			1.0
1039	18		81		1.0
1049		80		19	1.0
1072	29		70		1.0
1082		89		10	0.999919
1118			80	20	0.999996
1146	95			4	0.997749
1208	36			63	1.0
1231	84		15		1.0
1250	3	10		86	1.0
1253		8		91	0.999807
1257	22	11		66	1.0
1259	77	11		11	0.968132
1261		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
87	106	ATCGAC ATCGAC ATCGAC AT	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain