SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29453

Length: 876 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29453

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	2.0e-27	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Putative uncharacterized protein 175	-	-	5.258e-10	-

Source	Gene names
Sma3	175; AT4g24130; At1g56580; At4g24130; At4g24130/T19F6_120; B1018E06.5; F25P12.97; GSVIVT00000522001; GSVIVT00008676001; GSVIVT00018729001; LOC_Os10g37400; LOC_Os11g38210; LOC_Os11g38220; LOC_Os11g38240; OJ1119_A04.127; OJ1119_A04.128; OSJNBa0076F20.19; Os

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF538	IPR007493	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56580.1	SVB Protein of unknown function, DUF538 chr1:21198402-21198902 REVERSE LENGTH=166	8.0e-40	47%
RefSeq	Arabidopsis thaliana	NP_564720.1	uncharacterized protein [Arabidopsis thaliana]	1.0e-39	47%
RefSeq	Populus trichocarpa	XP_002299430.1	predicted protein [Populus trichocarpa]	0.0	56%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
615		71		28	1.0
647		28		71	1.0
659	14			85	0.993533
661	16			83	0.994512
662	16	83			0.994512
664	16		83		0.994512
665	16		83		0.994512
666	14			85	0.993533
667		14		85	0.993533
669		85	14		0.993533
717		2		97	0.907451
741		2		97	0.962263
776		3		96	0.980996
782	86		13		1.0
794		96		3	0.987242
814	89	2			1.0
816	10		2	87	1.0
827		80	19		1.0
839	21	28			1.0
844	25			75	0.996473
845			25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
302	313	AGA AGA AGA AGA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain