SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29381

Length: 1353 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29381

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Niemann-Pick C1 protein [Arabidopsis thaliana] gb\|AEE31919.1\| Niemann-Pick C1 protein [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Sma3	Cholesterol transport protein	-	-	2.166e-09	-

Source	Gene names
Sma3	AT4g38350; F22I13.120; GSVIVT00002883001; GSVIVT00036266001; H0409D10.4; OSJNBb0078D11.11; OsI_16991; OsJ_15793; PHYPADRAFT_132440; POPTRDRAFT_721264; POPTRDRAFT_818865; RCOM_1601160; VITISV_009389; VITISV_014157;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	cholesterol transport	GO:0030301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38350.2	Patched family protein chr4:17958324-17966846 REVERSE LENGTH=1297	58%
RefSeq	Arabidopsis thaliana	NP_001190953.1	Patched family protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002312804.1	cholesterol transport protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6I0S6

Fln msg: Overlapping hits, possible frame ERROR between 722 and 719, Distance to subject end: 948 aas, your sequence is shorter than subject: 350 - 1291

Fln protein: MVQPRSKVMDSLREALHLSRMSLTALIMVQGIILMYTVNGDLLDSNMLGASNSSSSEKHANEYCSMYGICGQREDGKVLNCPYSVPARKPSKLFSSKIQSLCPTITGNVCCTTDQFDVLRQQVQQAVPLLVGCPACLRxxxNLFCELACSPNQSLFVNVTSISQVKNNSTVDGIAFYVTSTYGEELFNSCKEVKFGAMNTRAIDFVGGGAMTYREWFAFLGRQAPLNQPGSPYSMDFITTVPPSSSMEPMNVSVFPCGDTSLGCSCGDCPSASICSDILPPVPHKNGSCSIHLGSAKVKCLDFAMAIVYIVLVSLVFGWGLLCKTEKSSKASPRMRPLLHTEEESELHSV

Protein Length: 351

Fln nts: ACTAGCAGTTCTATCTGAAAACTCACGTACACCCAATGGGCATTTGTGAAGGCCATACGCTGCCGTAACAGTGAATCAACCTCCCTCTACTTCAGCAGAACAAGCTACCATGACGCATCACTTTTGACTAACACTCGGTGAACATTACTAAATATATACTGTTTTCACGACAGGCATGCCATTCCCTCGAATGTGGTTTTAAATGCGTGGGGCGAGTCGCGGATTAGTAGGGGAAGATTTTGACGAAGGAATTCAACAGAAAGGAAATTAGGCGGCGTGAACGAAGTTTTAGCCAGCGATCG_-_ATGGTTCAGCCGCGGAGCAAAGTCATGGATTCGCTGCGAGAGGCCTTGCATCTCTCCAGGATGTCTTTGACGGCGTTGATTATGGTCCAGGGAATTATTTTAATGTATACTGTCAATGGGGATTTACTAGACTCAAATATGCTTGGAGCATCAAATTCTTCGTCATCGGAAAAACATGCCAATGAATACTGCTCGATGTACGGCATTTGTGGACAACGTGAAGATGGAAAAGTTCTAAACTGCCCCTATTCTGTACCAGCTCGGAAGCCTAGTAAGTTATTTTCTTCAAAGATTCAGAGTCTTTGCCCAACTATTACGGGGAATGTTTGTTGCACTACTGATCAATTTGATGTTTTGCGCCAACAAGTACAACAGGCCGTTCCCTTGCTTGTTGGTTGTCCTGCATGCCTACGGxxxxxxxxxAATCTCTTTTGTGAGCTGGCATGCTCACCAAATCAAAGTCTTTTTGTGAATGTCACATCAATTTCTCAGGTAAAAAATAATTCAACCGTAGATGGCATTGCCTTCTATGTAACGAGTACTTATGGTGAGGAGTTATTCAACTCTTGCAAAGAGGTCAAATTTGGTGCCATGAATACTCGAGCAATTGACTTTGTCGGAGGCGGGGCAATGACTTATAGAGAATGGTTTGCTTTCCTTGGCCGCCAAGCACCGCTTAATCAACCTGGGTCACCATATTCAATGGATTTCATAACAACAGTTCCACCATCTTCTTCCATGGAGCCAATGAATGTATCCGTCTTTCCATGTGGAGATACTTCATTGGGATGTTCTTGTGGGGATTGCCCTTCCGCAAGCATCTGCTCTGACATATTGCCTCCTGTACCACACAAGAATGGCTCCTGCTCTATTCACCTTGGTTCTGCGAAGGTGAAATGCTTAGATTTTGCAATGGCTATTGTGTACATTGTACTTGTTTCTCTAGTATTTGGCTGGGGTTTGTTATGCAAAACTGAAAAATCGAGCAAGGCATCACCTAGGATGAGGCCCTTATTGCACACTGAAGAAGAAAGTGAACTCCATTCTGTTAA

Fln Alignment:

Contig29381___LTALIMVQGIILMYTVNGDLLDSNMLGAXXXXXXEKHANEYCSMYGICGQREDGKVLNCPYSVPARKPSKLFSSKIQSLCPTITGNVCCTTDQFDVLRQQVQQAVPLLVGCPACLRNxLNLFCELACSPNQSLFVNVTSISQVKNNSTVDGIAFYVTSTYGEELFNSCKEVKFGAMNTRAIDFVGGGAMTYREWFAFLGRQAPLNQPGSPYSMDFITTVPPSSSMEPMNVSVFPCGDTSLGCSCGDCPSASICSDILPPVPHKNGSCSIHLGSAKVKCLDFAMAIVYIVLVSLVFGWGLLCKT-EKSSKASPRMRP
F6I0S6_______________LAALSLLQVLIFASLLGAEKTDSQFLLFPNATSGERHSPEYCAMYDICGERSDGKVLNCPYGTPAVKPDEFLSAKIQSLCPMISGNVCCTEAQFDTLRAQVQQAIPFLVGCPACLRNxLNLFCELSCSPNQSLFINVTSIAKGNCSSTVDGIDFYVSDAFGEGLYNSCKDVKFGTMNTRAIQFIGAGARNFKEWFAFIGQQADLGMPGSPYAINF-KSRPESSGMELMNVSIYSCGDTSLGCSCGDCPSSPVCSDYEPPSPQQKDACSISLGSVKVKCIEFSLAILYIVLVSAFFGWGLFHRTRERRRIPASNMKP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1161	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain