SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29263

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene29263
GGTACGGCAATGCTCTGAGTGGAAGCATCCCAACTTCTCTCGCCAACTGCACTTCACTTACAGCATTGCTTGTTGCGTCCAACAATTTGAGTGGTCCAATACCATCAGAATTCAGTCGCCTGGTCAGGTTGGAAACACTCTACTTCGACGACAATAGTTTAAGTGGAAGCATCCCAACTTCTCTGGTCAACTGCACTTCACTTTATCGGTTGAGCGGTAGCGGAAACAAATTGAGTGGTCCAATCCCTTCAGGTATGGGTTTGATGGAAAACATATCATTTATTGGTTTATCGAACAACTCTCTCAGTGGCCACATCCCTCCCACCCTATTCAATTGTACTCAGCTATCTGCGTTGTACCTAAGCACTAACAACATTAAT

Ace file of the UniGene sp_v3.0_unigene29263 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor protein kinase [Pinus sylvestris]	-	-	2.0e-23	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	BRI1 protein	-	-	8.455e-08	-

Source	Gene names
Sma3	AT1G34110; AT4G39400; At4g39400; BRI1; CURL3; Cf-5; EILP; F12G12.7; F23K16.30; GSVIVT00014274001; GSVIVT00017148001; GSVIVT00017153001; GSVIVT00017830001; GSVIVT00021114001; GSVIVT00021362001; Hcr2-5D; LKA; LOC_Os11g36160; LRR-RLK; MpRLK3; Os06g0589800; O

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	steroid binding	GO:0005496	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	detection of brassinosteroid stimulus	GO:0009729	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein chr1:12417331-12421246 REVERSE LENGTH=1072	2.0e-28	46%
RefSeq	Arabidopsis thaliana	NP_174673.3	leucine-rich receptor-like protein kinase [Arabidopsis thaliana]	2.0e-28	46%
RefSeq	Populus trichocarpa	XP_002302156.1	predicted protein [Populus trichocarpa]	2.0e-29	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 126 - 818

Fln protein: YGNALSGSIPTSLANCTSLTALLVASNNLSGPIPSEFSRLVRLETLYFDDNSLSGSIPTSLVNCTSLYRLSGSGNKLSGPIPSGMGLMENISFIGLSNNSLSGHIPPTLFNCTQLSALYLSTNNIN

Protein Length: 127

Fln nts: GGTACGGCAATGCTCTGAGTGGAAGCATCCCAACTTCTCTCGCCAACTGCACTTCACTTACAGCATTGCTTGTTGCGTCCAACAATTTGAGTGGTCCAATACCATCAGAATTCAGTCGCCTGGTCAGGTTGGAAACACTCTACTTCGACGACAATAGTTTAAGTGGAAGCATCCCAACTTCTCTGGTCAACTGCACTTCACTTTATCGGTTGAGCGGTAGCGGAAACAAATTGAGTGGTCCAATCCCTTCAGGTATGGGTTTGATGGAAAACATATCATTTATTGGTTTATCGAACAACTCTCTCAGTGGCCACATCCCTCCCACCCTATTCAATTGTACTCAGCTATCTGCGTTGTACCTAAGCACTAACAACATTAAT

Fln Alignment:

Contig29263___GNALSGSIPTSLANCTSLTALLVASNNLSGPIPSEFSRLVRLETLYFDDNSLSGSIPTSLVNCTSLYRLSGSGNKLSGPIPSGMGLMENISFIGL-----SNNSLSGHIPPTLFNCTQLSALYLSTNNI
B8LQX6_______________GNSLSGHIPSSLCNCTELRYIAFSHNNLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNRLSGNIPSQFGSLRELFQLSIYGPEYVKGSISGSIPSEIGNCSSLVWLDFGNNRV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
173		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain