SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29260

Length: 340 nt

UniGene Fasta

>sp_v3.0_unigene29260
AGTTTAAACCCGTAAAGGTGGCTGAAGGATGGAATCTTTCAGCCTCAATCACCATTCAAATTCACTGCATTCCATGCAGGACCTCGCATTTGTCTTGGTAAAGAGTTTGCGTATATGCAAATGAAGATTGTTGCTGCTGTCCTCATTAGTTTCTTCAAATTTGAAGCTGTTAAAGATATAGAAGTGAGATATCGTCCTTCATTCGGATTACATATGAATGAAGACGGACTAAATCTTCAAGTAAATCCTAGGTTAGCTTGGTGATCACAACTTTTACTTCCCAATAAGCAATGTACACTAAAAGCTTTCATTAGTTGTATATAAATTGAAAAGTTTTTTT

Ace file of the UniGene sp_v3.0_unigene29260

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA	-	-	1.0e-29	75%
FL-Next	sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine).	-	-	0.0	75%
Sma3	Cytochrome P450 family protein	-	-	3.4e-10	-

Source	Gene names
Sma3	At1g69500; At1g69500/F10D13_15; At2g44890; At2g45510; CYP704A10; CYP704A11; CYP704A14; CYP704C1; CYP704G7; CYP704G9; F10D13_15; GSVIVT00026263001; GSVIVT00026264001; GSVIVT00026267001; GSVIVT00026268001; GSVIVT00036932001; GSVIVT00038513001; GSVIVT0003851

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45510.1	CYP704A2 cytochrome P450, family 704, subfamily A, polypeptide 2 chr2:18753085-18754944 FORWARD LENGTH=511	3.0e-24	58%
RefSeq	Arabidopsis thaliana	NP_182075.1	cytochrome P450, family 704, subfamily A, polypeptide 2 [Arabidopsis thaliana]	3.0e-24	58%
RefSeq	Populus trichocarpa	XP_002320071.1	cytochrome P450 [Populus trichocarpa]	1.0e-23	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q50EK3

Fln msg: your sequence is shorter than subject: 88 - 518

Fln protein: SLNP*RWLKDGIFQPQSPFKFTAFHAGPRICLGKEFAYMQMKIVAAVLISFFKFEAVKDIEVRYRPSFGLHMNEDGLNLQVNPRLAW*

Protein Length: 89

Fln nts: AGTTTAAACCCGTAAAGGTGGCTGAAGGATGGAATCTTTCAGCCTCAATCACCATTCAAATTCACTGCATTCCATGCAGGACCTCGCATTTGTCTTGGTAAAGAGTTTGCGTATATGCAAATGAAGATTGTTGCTGCTGTCCTCATTAGTTTCTTCAAATTTGAAGCTGTTAAAGATATAGAAGTGAGATATCGTCCTTCATTCGGATTACATATGAATGAAGACGGACTAAATCTTCAAGTAAATCCTAGGTTAGCTTGGTGA___TCACAACTTTTACTTCCCAATAAGCAATGTACACTAAAAGCTTTCATTAGTTGTATATAAATTGAAAAGTTTTTTT

Fln Alignment:

Contig29260___P*RWLKDGIFQPQSPFKFTAFHAGPRICLGKEFAYMQMKIVAAVLISFFKFEAVKDIEVRYRPSFGLHMNEDGLNLQVNPRL
Q50EK3_______________PERWIQDGIFHPKSPFKFPAFQAGPRTCLGKDFAYLQMKIVAAVLVRFFKFEAVKTKEVRYRTMLTLHMNEDGLNVQVTPRL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
118	33	66			0.997452
132		33		66	0.997452
291	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain