SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29177

Length: 2863 nt

UniGene Fasta

>sp_v3.0_unigene29177
CGTCCTAGGCCCGTAAAGCAGGGGCGAGGGGCCACCCAAAGGCCACCCAGAATGGATGATTCGAGGATTCTATGTTGATTCTGTGTTTTCTCAGCGCAGACAAATTCTTAAAAACTAAAACTGGTGGACACGAAGATGAAGGAGGAATAAGATTCATCACGAAGAAAGGGCTTCCAACTCTGGGAGATCCACTTATGGAGCTTAGTGGCCAATGACCACTGAAATCGGCAGTAAACATTGACAAATACCGCTTGGTGCAGAGCTTCCTAGCCAAGATGAAGCTGCCTTTTCAATTACATAATCAAGAGTATCCATCTGAGCGAAGGGGCTCTGGAACACTCCCATATTTTAAAGATTTCTTCAAGCCATTAGCAGCCTCTGCAACAGCAATAAGAACCCCCACTCCCATCTTTCAAAGATTTCTTCAAGCCATTAGAGGTCTCTGCACCAGCAATAAGAACCCTTTCGCTCGAAGGGAAGAAAAATGATGTTAAAAAGGACGCCTCGAGCAGCACAACCTCTAGCCAAGCTGAAGAAAGAGATCTGAGACGCACAGGAGGAACCCGACGGCTAGGGTTGCAGAAAGCTTCACGCAGAAGGCAGAGCCCGGAGATTAGAACAATGTTGTTTTCAATAAAGAAAAATTGTAAAACGTCGTACTTTGATATTTATAATTGAAAAAAGCATCTTACAAAAGGTAAACGTGGGTACCCACTTAATCAAGGAGTTGGCCTTAAAACAGCCTTCTCGCCATTATTATCACAGTGAATTCAATAGAGACTATACGACCAGACAGAAATGAAAGACCATCATCCATCGTCATCCAGTGGTTTTGTAGGAGACGGATCAGTGGATCTCCATGGACGTTCTGTTAGCAGAGCTCATACTGGGCGATGGAAAGCATCACTTCTCATCATTGGAGTGGAGATAGCAGAGAGGTTTGCCTATACAGGCATACGTTCAAATTTGGTGACTTACCTCACAGATGTTTTGCGTGAGAGTACTGCTACTGCTGCAAAGAACGTGAATGACTGGTCAGGAGTGGCGTCCATGCTTCCTTTCCTTGGGGCTTTTGTTGCAGATTCATATTTGGGTCGTTACTGGACTATTGTCGTCACATCTGTCATCTATTTGCTGGGATTTATTTTGGTCACTTTGTCCGCCTCTTTGACGAGTCTAAAGCAGGCTGGGATTTTCTTCTTCTCAATCTATTTGGTTGCTTTGGGGCAAGGAGGCTTCAAACCCTGTTTACAAGCATTTGGTGCTGATCAGTTTGATGAGGACGACCCGGAAGAGAATAAGTATAAGAGTTCATTCTTTAATTGGTGGTATTTTAGTATTTGCATTGGTACTCTTACAGGATTCGCTATACTCACATATATTCAGGACGATATAGGATGGGGCCTAGGATTTGGCATTCCTGCTGTGGCTATGGCAATAGCACTATTTATCTTCTTGTGTGGGACAAAATTGTACCGGCATAAACTTCCTGGTGGTAGCCCGCTTACTCGAATTGTCCATGTCTTTGTTGCAACATTTTATAAATGGAACGTTTCCACTTCTTATCAGGAAGAAAATAACGTAGCTCGCATTGAAGAAAGAGAAGCTTCGATTTTTGGACCAAGAAGACAGCAATTGCGTACTGATCAGTTTAGGTTTCTTGACAAAGCTACAGTTGAAGATGAGTTGGACCATGAGTGTAAAACAACCTTCAATTGGCGACTATGCACCGTCCAAGAGGTTGAAGAGGTGAAAGATGTTCTTGGGCTGTTACCAATTTGGATGGCATGTTTGATGTATGGGGTTGTCTTTGCACAATCTTCAACCTTTTTCACAAAACAGGGGAGCACAATGGATAGAAAGATTGGAACACATTTTGAGATCCCTGCTGCAAGCTTACAGTGTTTTACTAGCCTATCTATTCTCCTATTGGTTCCTGTTTATGACCGCATCTTTGTTCCAATTGCAAGGCGCTTGACAGGAAATGAACGGGGGATTACTATGCTGCAAAGGATAGGCACTGGCATGTTTTTCTCCATTATATCAATGATTGTTGCCGCATTGATAGAGATTAGAAGAATCGAGGTAGCAAAGGACAGTGGACTGATAGACCTGCCCAACGCAACAATTCCCTTGAGCATTTTTCTGCTGCTTCCACAATATGTGCTATTTGGCATAGCGGATGTATTTGCAATGGTAGGAATGCAAGAATTCTTTTATGATCAGATGCCAGACACTATGAAAAGCCTGGGTATTGCTGTGAATCTGAGTGTTGTAGGAGTTTCTAGTTTCATTAGCAGCATCCTTATTTCAGTTACTGAGAAGGTTAGTTGCAGAAGCAAAGGGGGTTGCTGGTTCACAAACAACTTGAACAAAGCTCATTTAGACTACTTTTATTGGCTTCTAGCCTCTCTGAGTGCGATCAATCTCTGCATTTACATGTTCTTAGCCAGCTGCTATCAGTATAAAAATGCCCAAAAGGATATTTCTTATGAGGACGAGGAATCCTTGAGCGAAAGGCCACTTCTTCCATCATGAGCATATGTTGTGATATTTAAGGGAATTGTTAAGGTATCTCTGTTTGGGCAGAGTGGCATTACTCTCTGGCAAGACAAATTGTAATGCTAGGTACAGTACATGTTATCCTCGATTTCTATGTTGAAAGTGTCCCATCTTAAATGAGTATTTGTTTGCAAATACCTTAGTTATAAATGGTGCATGTGTATTTTGGAGCCCTTAGGACGATTAGGTAATCCTATATACAAATATGACAGTTACTTGCATAAAGCGAGTGGCCTTCACTGTTTAAAGAGGCTGTGATTAACAGGAATTCTGTTAAACATGGGAGCTTCAGTTGGCATTG

Ace file of the UniGene sp_v3.0_unigene29177

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptide transporter [Hakea actites]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	52%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002327275.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW85

Fln msg:

Fln protein: MKDHHPSSSSGFVGDGSVDLHGRSVSRAHTGRWKASLLIIGVEIAERFAYTGIRSNLVTYLTDVLRESTATAAKNVNDWSGVASMLPFLGAFVADSYLGRYWTIVVTSVIYLLGFILVTLSASLTSLKQAGIFFFSIYLVALGQGGFKPCLQAFGADQFDEDDPEENKYKSSFFNWWYFSICIGTLTGFAILTYIQDDIGWGLGFGIPAVAMAIALFIFLCGTKLYRHKLPGGSPLTRIVHVFVATFYKWNVSTSYQEENNVARIEEREASIFGPRRQQLRTDQFRFLDKATVEDELDHECKTTFNWRLCTVQEVEEVKDVLGLLPIWMACLMYGVVFAQSSTFFTKQGSTMDRKIGTHFEIPAASLQCFTSLSILLLVPVYDRIFVPIARRLTGNERGITMLQRIGTGMFFSIISMIVAALIEIRRIEVAKDSGLIDLPNATIPLSIFLLLPQYVLFGIADVFAMVGMQEFFYDQMPDTMKSLGIAVNLSVVGVSSFISSILISVTEKVSCRSKGGCWFTNNLNKAHLDYFYWLLASLSAINLCIYMFLASCYQYKNAQKDISYEDEESLSERPLLPS*

Protein Length: 581

Fln nts: CGTCCTAGGCCCGTAAAGCAGGGGCGAGGGGCCACCCAAAGGCCACCCAGAATGGATGATTCGAGGATTCTATGTTGATTCTGTGTTTTCTCAGCGCAGACAAATTCTTAAAAACTAAAACTGGTGGACACGAAGATGAAGGAGGAATAAGATTCATCACGAAGAAAGGGCTTCCAACTCTGGGAGATCCACTTATGGAGCTTAGTGGCCAATGACCACTGAAATCGGCAGTAAACATTGACAAATACCGCTTGGTGCAGAGCTTCCTAGCCAAGATGAAGCTGCCTTTTCAATTACATAATCAAGAGTATCCATCTGAGCGAAGGGGCTCTGGAACACTCCCATATTTTAAAGATTTCTTCAAGCCATTAGCAGCCTCTGCAACAGCAATAAGAACCCCCACTCCCATCTTTCAAAGATTTCTTCAAGCCATTAGAGGTCTCTGCACCAGCAATAAGAACCCTTTCGCTCGAAGGGAAGAAAAATGATGTTAAAAAGGACGCCTCGAGCAGCACAACCTCTAGCCAAGCTGAAGAAAGAGATCTGAGACGCACAGGAGGAACCCGACGGCTAGGGTTGCAGAAAGCTTCACGCAGAAGGCAGAGCCCGGAGATTAGAACAATGTTGTTTTCAATAAAGAAAAATTGTAAAACGTCGTACTTTGATATTTATAATTGAAAAAAGCATCTTACAAAAGGTAAACGTGGGTACCCACTTAATCAAGGAGTTGGCCTTAAAACAGCCTTCTCGCCATTATTATCACAGTGAATTCAATAGAGACTATACGACCAGACAGAA_-_ATGAAAGACCATCATCCATCGTCATCCAGTGGTTTTGTAGGAGACGGATCAGTGGATCTCCATGGACGTTCTGTTAGCAGAGCTCATACTGGGCGATGGAAAGCATCACTTCTCATCATTGGAGTGGAGATAGCAGAGAGGTTTGCCTATACAGGCATACGTTCAAATTTGGTGACTTACCTCACAGATGTTTTGCGTGAGAGTACTGCTACTGCTGCAAAGAACGTGAATGACTGGTCAGGAGTGGCGTCCATGCTTCCTTTCCTTGGGGCTTTTGTTGCAGATTCATATTTGGGTCGTTACTGGACTATTGTCGTCACATCTGTCATCTATTTGCTGGGATTTATTTTGGTCACTTTGTCCGCCTCTTTGACGAGTCTAAAGCAGGCTGGGATTTTCTTCTTCTCAATCTATTTGGTTGCTTTGGGGCAAGGAGGCTTCAAACCCTGTTTACAAGCATTTGGTGCTGATCAGTTTGATGAGGACGACCCGGAAGAGAATAAGTATAAGAGTTCATTCTTTAATTGGTGGTATTTTAGTATTTGCATTGGTACTCTTACAGGATTCGCTATACTCACATATATTCAGGACGATATAGGATGGGGCCTAGGATTTGGCATTCCTGCTGTGGCTATGGCAATAGCACTATTTATCTTCTTGTGTGGGACAAAATTGTACCGGCATAAACTTCCTGGTGGTAGCCCGCTTACTCGAATTGTCCATGTCTTTGTTGCAACATTTTATAAATGGAACGTTTCCACTTCTTATCAGGAAGAAAATAACGTAGCTCGCATTGAAGAAAGAGAAGCTTCGATTTTTGGACCAAGAAGACAGCAATTGCGTACTGATCAGTTTAGGTTTCTTGACAAAGCTACAGTTGAAGATGAGTTGGACCATGAGTGTAAAACAACCTTCAATTGGCGACTATGCACCGTCCAAGAGGTTGAAGAGGTGAAAGATGTTCTTGGGCTGTTACCAATTTGGATGGCATGTTTGATGTATGGGGTTGTCTTTGCACAATCTTCAACCTTTTTCACAAAACAGGGGAGCACAATGGATAGAAAGATTGGAACACATTTTGAGATCCCTGCTGCAAGCTTACAGTGTTTTACTAGCCTATCTATTCTCCTATTGGTTCCTGTTTATGACCGCATCTTTGTTCCAATTGCAAGGCGCTTGACAGGAAATGAACGGGGGATTACTATGCTGCAAAGGATAGGCACTGGCATGTTTTTCTCCATTATATCAATGATTGTTGCCGCATTGATAGAGATTAGAAGAATCGAGGTAGCAAAGGACAGTGGACTGATAGACCTGCCCAACGCAACAATTCCCTTGAGCATTTTTCTGCTGCTTCCACAATATGTGCTATTTGGCATAGCGGATGTATTTGCAATGGTAGGAATGCAAGAATTCTTTTATGATCAGATGCCAGACACTATGAAAAGCCTGGGTATTGCTGTGAATCTGAGTGTTGTAGGAGTTTCTAGTTTCATTAGCAGCATCCTTATTTCAGTTACTGAGAAGGTTAGTTGCAGAAGCAAAGGGGGTTGCTGGTTCACAAACAACTTGAACAAAGCTCATTTAGACTACTTTTATTGGCTTCTAGCCTCTCTGAGTGCGATCAATCTCTGCATTTACATGTTCTTAGCCAGCTGCTATCAGTATAAAAATGCCCAAAAGGATATTTCTTATGAGGACGAGGAATCCTTGAGCGAAAGGCCACTTCTTCCATCATGA___GCATATGTTGTGATATTTAAGGGAATTGTTAAGGTATCTCTGTTTGGGCAGAGTGGCATTACTCTCTGGCAAGACAAATTGTAATGCTAGGTACAGTACATGTTATCCTCGATTTCTATGTTGAAAGTGTCCCATCTTAAATGAGTATTTGTTTGCAAATACCTTAGTTATAAATGGTGCATGTGTATTTTGGAGCCCTTAGGACGATTAGGTAATCCTATATACAAATATGACAGTTACTTGCATAAAGCGAGTGGCCTTCACTGTTTAAAGAGGCTGTGATTAACAGGAATTCTGTTAAACATGGGAGCTTCAGTTGGCATTG

Fln Alignment:

Contig29177___MKDHHPXXXXXXXXXXXXXLHGRSVSRAHTGRWKASLLIIGVEIAERFAYTGIRSNLVTYLTDVLRESTATAAKNVNDWSGVASMLPFLGAFVADSYLGRYWTIVVTSVIYLLGFILVTLSASLTSLKQAGIFFFSIYLVALGQGGFKPCLQAFGADQFDEDDPEENKYKSSFFNWWYFSICIGTLTGFAILTYIQDDIGWGLGFGIPAVAMAIALFIFLCGTKLYRHKLPGGSPLTRIVHVFVATFYKWNVSTSYQEENNVARIEEREASIFGPRRQQLRTDQFRFLDKATVEDELDHECKTTFNWRLCTVQEVEEVKDVLGLLPIWMACLMYGVVFAQSSTFFTKQGSTMDRKIGTHFEIPAASLQCFTSLSILLLVPVYDRIFVPIARRLTGNERGITMLQRIGTGMFFSIISMIVAALIEIRRIEVAKDSGLIDLPNATIPLSIFLLLPQYVLFGIADVFAMVGMQEFFYDQMPDTMKSLGIAVNLXXXXXXXXXXXXXXXXTEKVSCRSKGGCWFTNNLNKAHLDYFYWLLASLSAINLCIYMFLASCYQYKNAQKDISYEDEESLSERPLLPS
A9NW85_______________MEEDHSSSFTSFVGDGSVDLHGRSVSRAHTGRWKASLFIIGVEMAERFAYAGILANLVIYLTDVMDESTATAAKNVNVWTGVASMLPFLGAFVADSYLGRYWTIALSSVIYLLGLILVTLSASLKSLNQIGFFFFSIYLVALGQGGHKPCLEAFGADQFEEDDPIEKKHKSSFFNYWYCGICIGSLIGVTVLVYIQDNVGWDLGFGIPAMTMAIALFIFLCGTRFYRHKLPGGSPLTRIIHVFVATFHKWNVSTSHQEKKEVAAAAERELLKFGSRRQYLPTDQFRFLDKATIEDKLDYECKTTRNWRLCTVEDVEDVKAILGLSPIWMSCLIFGVVFAQSSTFFTKQGATMDRKIGKHFEIPAASLQGFISLSIILLLPVYDRIFVPNARKLTGNERGITFLQRIGTGMFISILSMIVAALAEIRRIKAAKDNGLIDMPEATIPLSISLLLPQYILFGIADVFTMVGLQEYFYDQMPDTMKTLGIAVYLSVFGVGSFLSSIIILVTEKLG----GSRWFVNNLNKAHLDYFYWLLASLSAINFFIYMFLASRYKYKNAQNNISYQ-EESCRARTLLPS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
162	33		66		1.0
197		33		66	1.0
214	33			66	1.0
258	66		33		0.997452
318		33		66	1.0
321	33		66		0.997452
377		75		25	1.0
406		85		14	0.993533
411		85	14		0.993533
415		85		14	0.993533
453	14	85			0.993533
555	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain