SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29159

Length: 1578 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29159

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GPI mannosyltransferase 1 n=3 Tax=Arabidopsis RepID=PIGM_ARATH	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	At5g22130; B1130H05.7; GSVIVT00034476001; LOC_Os03g46750; Os03g0670200; OsI_12951; PHYPADRAFT_140814; PIGM; PNT1; POPTRDRAFT_639801; RCOM_1264560; T6G21.34; VITISV_017610;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Mannosyltransferase, DXD	IPR007704	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22130.2	-	54%
RefSeq	Arabidopsis thaliana	NP_680199.1	GPI mannosyltransferase 1 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002299189.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMK7

Fln msg: Separated hits, possible frame ERROR between 817 and 820, your sequence is longer than subject: 408 - 293

Fln protein: MLILYGEWQDTHMEVHYTDIDYLVFSDAASLMVSNKSPYDRSTYRYSPLLALLLIPNSYLHHCWGKLLFSAAGKQCTFCVAVWLFNPFTFTIATRGNCEPLVCAMILWILICLMRGHIVEAAIWYGLVVHFRIYPIIYVLPILIVLDENFLTSSQSLRLSSWNTKQPRLSDSESIFSCIKAIFRVNLGLVLKALLNKHRILFGMLSGGVFFFLTGIFYYLYGEKFLNEALLYHLTRTDPRHNVATYGYxxIYLHHEHEFTIVERLMAFLPQFTVQLVLVLFFAKDLPLCLFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWTKLHLQWKGLLCIGVWVAAQIHWLSWAYLLEFKGINVFVQLWLASIIFLVANTYVLIMILVNHKFCPLFQQKAAITADGYGNKCD*

Protein Length: 409

Fln nts: GGACTGAACACGCCAATGGAGATGTTAAGCAGGGCATCCTTGATTGGTTTTTCTTGCTATTCTACGTTTG_-_ATGCTTATACTTTATGGAGAGTGGCAGGACACCCACATGGAGGTTCATTACACTGACATTGATTACTTGGTCTTCTCTGATGCTGCATCTCTAATGGTTTCCAACAAGTCTCCATATGACAGATCTACATACAGATATTCTCCACTCTTAGCTCTCTTGCTGATACCCAATTCCTACCTGCATCACTGCTGGGGCAAGCTCCTCTTTTCCGCTGCAGGGAAACAGTGTACGTTTTGTGTGGCAGTATGGCTTTTCAATCCATTCACATTCACTATTGCTACCAGGGGAAATTGTGAACCTCTTGTGTGTGCCATGATTTTGTGGATTCTGATATGTCTAATGAGAGGTCATATTGTGGAGGCAGCAATATGGTATGGACTAGTTGTCCATTTCAGAATCTACCCTATAATATATGTTCTCCCTATTCTCATTGTTCTTGATGAAAATTTTTTAACCTCAAGTCAGAGTCTTCGTCTCAGTAGTTGGAACACTAAACAACCAAGGTTATCAGATTCTGAATCAATATTCTCATGTATCAAAGCCATATTTAGGGTAAACTTAGGGCTCGTGTTAAAGGCACTCTTGAACAAACATAGAATACTATTTGGAATGTTATCTGGAGGGGTGTTCTTTTTCTTGACTGGTATTTTCTATTATTTATATGGAGAAAAATTCTTGAATGAAGCTCTGCTCTACCACCTCACACGTACTGATCCAAGGCACAACGTCGCCACCTATGGCTATCAxxxCATTTATCTTCATCATGAGCATGAGTTCACCATAGTGGAAAGGCTTATGGCATTTTTGCCACAGTTCACGGTGCAGCTGGTGCTTGTTCTTTTCTTTGCCAAAGATCTTCCACTCTGCCTTTTTGCACAGACAGTTGCATTCGTTGCTTTCAACAAGGTTATCACAGCACAGTACTTTGTTTGGTTTTTTTGTCTTTTGCCACTCATTTTGCCTTGGACAAAGCTCCACTTGCAATGGAAGGGCTTGTTATGTATTGGAGTATGGGTTGCTGCTCAGATTCACTGGTTGAGTTGGGCTTATTTGCTGGAGTTTAAAGGCATAAATGTTTTTGTACAACTGTGGTTGGCAAGCATCATCTTTTTGGTAGCAAACACATATGTCCTAATAATGATCTTGGTGAATCATAAGTTTTGTCCTCTTTTTCAACAGAAAGCAGCAATTACTGCTGATGGATATGGAAACAAGTGTGACTGA___GAGAGACAACTGGCCAATTTAGTCCAGAAATAATCAAAATGCAATTGAAGGTTGTGTGTTATGTTTGCTTCTGTAATCCAGAGTATTGTTTCCTTGTCCATTATGTCATCCTTTGTCAATTTGCTATCAGTCTAGTGTCCTTTGTCAGGACACGGACCACAAAAGTATGCAGCATGGCTTTTCCAATACAGTGGTTCTCTAAGATTTGTTGTCTTGTTAAATTGCAGAGCAAGAAAACAATTAGATTACAGTAGAATGAACTTAAAAATAACTGAGGTTTAATAC

Fln Alignment:

Contig29159___MRGHIVEAAIWYGLVVHFRXXXXXXXXXXXXXXDENFLTSSQSLRLSSWNTKQPRLSDSESIFSCIKAIFRVNLGLVLKALLNKHRILFGMLSGGVFFFLTGIFYYLYGEKFLNEALLYHLTRTDPRHNVATYGYHxIYLHHEHEFTIVERLMAFLPQFTVQLVLVLFFAKDLPLCLFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWTKLHLQWKGLLCIGVWVAAQIHWLSWAYLLEFKGINVFVQLWLASIIFLVANTYVLIMILVNHKFCPLFQQKAAITADGYGNKCD
B8LMK7_______________MRGHVVEAAIWYGLVVHFRIYPIIYVLPILIVLDEQYLTSSQSLRLSYWNTKQPRLSDSESIFLCIKAIFRVNLGLVLKKLLNKHRILFGMLSGGVFFLLTGIFYYLYGEKFLDEALLYHLTRTDPRHNFSIYFYHxIYLHHEHEFTLVERLMAFLPQFSVQLVLVLFFAKDLPLCLFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWTKLHLQWKGLVCIGLWVAAQIHWLSWAYLLEFKGINVFVQLWLASIVFLVAYTCVLIMILVNHKFCPLFRQKVAITDDGCGNKSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain