SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29085

Length: 2712 nt

UniGene Fasta

>sp_v3.0_unigene29085
TTCTTAAAACAGTCGTTAATCAACCATGATGTCTGGTGATTGAACCGCTCGGTGGTTTTCTGAATATTCCGTTATGCTCTCCAGCGTGGTTAGGACGCACGAATTCCAATAGATAAATGAACCCTACATCTTTGGGTCTATAGCGAGGGTCCAGTCGCTGGTTCGAAACCTGGCAAAGACATGTGGAGTTCATCTACTGACTTGCCGTGCTCTGCATGTTCCTTCACGGACACGGAAAAGGCCGCGAAAGATTGCTTCGCGGACGCTGATAGCTTGCGTGTGGTAGGCCGTCGGAATAAGTCCGAAGGTTCATTTCTTTGCTTTGAATTTTTTTTGACTCGGATCAAAACCTCGCATGCTGGGATTTTGAGGGATAGAATACGCGGCGTGCTCTAATGCTTTAGATTTTGTTTCTTATGTGTGTAAATGGCGTCTGTAGAGCTCTGTTACTGAGATAAAATTTTGACTCTCTTAAGAACTGCGAGGTTTTTGTCAGATTATTGGGTATACGACGTACAGATATTATCTTTCCCATTTCGGCAAACTTTGAGCTGCTTTTACCGAATACTTCGGTTAAATTTCAGCGTTTTGTGACCTGTCAACATTATGTTGTTTTGAAGAATTTGCCGAAAAAATCTTTTGGCCAAGCGTCCTTTTGAATGCATCTCGTAGCGTTTTAAGCTCTTCCTCGGTTTTATCATCTTTCATTGCCGGAAATTGAGGTTTGAGGTCCAAATCTCATCATGCCACTTTTCCAGATGGCTTTAATGCATTGAGAAAATAAACTGCAAATTTCCTTCATAAAACTGGAAACGCATTCCGGAGCTACTTTGCCGTTTTTAATTTCGTCAGGTTTGGGCCTTTTTATCTTTAAAGTTTGTATAGTAGCCACCTGCAATCTTTTGTAGTGAACGGAGGCAGAAACGTAGACACAGTTCAAGCAGTCGATGGCATTCTGAATCTCTTTACTAGTTCGGAGCATAAGTAGCAGAAGGATCCCTGGTTCAGATAGGCAGATATACTGAATGGACCGAGAATCCCTTCCTACTGCATGGCTTTTCTTGTTCCTCTTTTTTTTGCTATTAATTTGTCCGTCAGATGTGCATGGAGCGTTGGCACCTACGAAGCGGAGCTCAAAAAATGCATATGCTACAATGATGTACATGGGGACACCGAGAGACTATGAATTCTATGTTGCTATCAGGGTTATGCTTCGATCGCTCATTCGGCTTAGAGTGAATGCAGACCTTGTTGTTATTGCTTCCAAGGATGTTCCTCAGCAATGGATAAGGACTCTACAGTCAGATGGGGTTATAGTTAAACCTGTGGACAATATAGAGAATCCTTACAGAAACCAGCCTGGATTCAACAAACGGTTTACTCTAACGCTGAATAAGCTGTATGCGTGGACCCTAGTAGAGTATGATCGCATTGTCATGCTTGATGCGGACAATCTTTTCCTGCAGAATGTGGATGAACTCTTTCAGTGTGGGCAGTTCTGTGCCGCTTTCATTAATCCCTGTATTTTCCATACGGGGCTTTTTGTGTTACAGCCCTCAGTGGCTGTGTTCCATGATATGATGCATGAACTGAAAACATTAAGAAAAAACAGAGATGGTGCAGACCAAGGATTTCTGGTTTCGTATTTTAATGACTTGCTAGATAGTCCGATGTTTTATCCTCCTGCCAATGGGTCTAAACTGAATGGAATCTATCGACTTCCTTTAGGATATCAGATGGACGCTTCTTATTTCTATTTGAAGCTGAAATGGCATGTGCCATGTGGACCAAATAGTGTCATCACTTTTCCTAGTGTTCCATGGATGAAGCCATGGTACTGGTGGTCATGGCCGGTTCTCCCCTTGGGGCTTTCTTGGCACGAGCAGAGGCGTCAGACAATAGGGTATGGTGCGGAGATTCCTCTGGTTATAGCCGAGTCACTGTTTTACTTGGTCACTCTGGCTCTATCGATGATTGCTTGCAGAGGCTCCCAAACAGCTTCATCTAAGTTCTGCCTCTTGAAATCAGAACAGGGTTTGTCATTCTATTCTATTGTTCCCAAGCTGTTGGTTCTATTTAGTATGGTGGGAAGTTACTTGCTTCCATTTTTGCTTGTTCCAAGAACAATTAATCCTCTGATTGGTTGGGGACTTTATTTACTGGGTTCCATGTCAATTGGGGTTCTTGTTATAAATGCCTTTCAGCTCCCAGTTTTGCCCGTGTTCACCCCCTGGTTGGGTATATTCGGTGTACTTCTTGTCATGGCCTTTCCTCTTTATTCCAATGGCATAGTAAGAGCAATATCGGTAGCAGTATATGCTGCTCTGGCTGCTCCGTTTGCATGGTGGGCTCTTGGAAGAGCAATGTCAACATTATCAAAATCTGATCAGCCACAGTTTCAGATCACCAAAATTTGTTGATGGAAATCATTCTAAACATTGCCATGAAATATACTCTTATCTCAGAAAACACTTTGCAGTCCCTGCAGTTCTTTTTATACAACCTACTGAGCTTCTTTTGAGTTTTCTGGACTCCTCGCAAGAGGTGAGCGGGCTGAATCAGAAGGCTTCAAATTCTGATGGATTTCTAATTCCGTTAAAGATATGCAGTGGCAATGTTTGAGTGAACTCTGTAATAGAAAGAGTTTAGTGGTATATCTCAAAATTGTGACATTCTCAATGGGATATATATATATATATATATATATATATA

Ace file of the UniGene sp_v3.0_unigene29085

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	Gene names
Sma3	AT4g16600; At2g35710; At2g35715; GSVIVT00009599001; LOC_Os10g40640; OSIGBa0143N19.10; OSJNBa0010H02.17; OSJNBb0014I11.6; Os04g0553800; Os10g0555100; OsGGT; OsI_16920; OsI_34602; OsJ_15720; OsJ_32415; PHYPADRAFT_112975; PHYPADRAFT_119507; PHYPADRAFT_150396

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35710.1	Nucleotide-diphospho-sugar transferases superfamily protein chr2:15010925-15014070 REVERSE LENGTH=497	66%
RefSeq	Arabidopsis thaliana	NP_565817.2	nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002303354.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 100 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 465 - 567

Fln protein: MDRESLPTAWLFLFLFFLLLICPSDVHGALAPTKRSSKNAYATMMYMGTPRDYEFYVAIRVMLRSLIRLRVNADLVVIASKDVPQQWIRTLQSDGVIVKPVDNIENPYRNQPGFNKRFTLTLNKLYAWTLVEYDRIVMLDADNLFLQNVDELFQCGQFCAAFINPCIFHTGLFVLQPSVAVFHDMMHELKTLRKNRDGADQGFLVSYFNDLLDSPMFYPPANGSKLNGIYRLPLGYQMDASYFYLKLKWHVPCGPNSVITFPSVPWMKPWYWWSWPVLPLGLSWHEQRRQTIGYGAEIPLVIAESLFYLVTLALSMIACRGSQTASSKFCLLKSEQGLSFYSIVPKLLVLFSMVGSYLLPFLLVPRTINPLIGWGLYLLGSMSIGVLVINAFQLPVLPVFTPWLGIFGVLLVMAFPLYSNGIVRAISVAVYAALAAPFAWWALGRAMSTLSKSDQPQFQITKIC*

Protein Length: 466

Fln nts: TTCTTAAAACAGTCGTTAATCAACCATGATGTCTGGTGATTGAACCGCTCGGTGGTTTTCTGAATATTCCGTTATGCTCTCCAGCGTGGTTAGGACGCACGAATTCCAATAGATAAATGAACCCTACATCTTTGGGTCTATAGCGAGGGTCCAGTCGCTGGTTCGAAACCTGGCAAAGACATGTGGAGTTCATCTACTGACTTGCCGTGCTCTGCATGTTCCTTCACGGACACGGAAAAGGCCGCGAAAGATTGCTTCGCGGACGCTGATAGCTTGCGTGTGGTAGGCCGTCGGAATAAGTCCGAAGGTTCATTTCTTTGCTTTGAATTTTTTTTGACTCGGATCAAAACCTCGCATGCTGGGATTTTGAGGGATAGAATACGCGGCGTGCTCTAATGCTTTAGATTTTGTTTCTTATGTGTGTAAATGGCGTCTGTAGAGCTCTGTTACTGAGATAAAATTTTGACTCTCTTAAGAACTGCGAGGTTTTTGTCAGATTATTGGGTATACGACGTACAGATATTATCTTTCCCATTTCGGCAAACTTTGAGCTGCTTTTACCGAATACTTCGGTTAAATTTCAGCGTTTTGTGACCTGTCAACATTATGTTGTTTTGAAGAATTTGCCGAAAAAATCTTTTGGCCAAGCGTCCTTTTGAATGCATCTCGTAGCGTTTTAAGCTCTTCCTCGGTTTTATCATCTTTCATTGCCGGAAATTGAGGTTTGAGGTCCAAATCTCATCATGCCACTTTTCCAGATGGCTTTAATGCATTGAGAAAATAAACTGCAAATTTCCTTCATAAAACTGGAAACGCATTCCGGAGCTACTTTGCCGTTTTTAATTTCGTCAGGTTTGGGCCTTTTTATCTTTAAAGTTTGTATAGTAGCCACCTGCAATCTTTTGTAGTGAACGGAGGCAGAAACGTAGACACAGTTCAAGCAGTCGATGGCATTCTGAATCTCTTTACTAGTTCGGAGCATAAGTAGCAGAAGGATCCCTGGTTCAGATAGGCAGATATACTGA_-_ATGGACCGAGAATCCCTTCCTACTGCATGGCTTTTCTTGTTCCTCTTTTTTTTGCTATTAATTTGTCCGTCAGATGTGCATGGAGCGTTGGCACCTACGAAGCGGAGCTCAAAAAATGCATATGCTACAATGATGTACATGGGGACACCGAGAGACTATGAATTCTATGTTGCTATCAGGGTTATGCTTCGATCGCTCATTCGGCTTAGAGTGAATGCAGACCTTGTTGTTATTGCTTCCAAGGATGTTCCTCAGCAATGGATAAGGACTCTACAGTCAGATGGGGTTATAGTTAAACCTGTGGACAATATAGAGAATCCTTACAGAAACCAGCCTGGATTCAACAAACGGTTTACTCTAACGCTGAATAAGCTGTATGCGTGGACCCTAGTAGAGTATGATCGCATTGTCATGCTTGATGCGGACAATCTTTTCCTGCAGAATGTGGATGAACTCTTTCAGTGTGGGCAGTTCTGTGCCGCTTTCATTAATCCCTGTATTTTCCATACGGGGCTTTTTGTGTTACAGCCCTCAGTGGCTGTGTTCCATGATATGATGCATGAACTGAAAACATTAAGAAAAAACAGAGATGGTGCAGACCAAGGATTTCTGGTTTCGTATTTTAATGACTTGCTAGATAGTCCGATGTTTTATCCTCCTGCCAATGGGTCTAAACTGAATGGAATCTATCGACTTCCTTTAGGATATCAGATGGACGCTTCTTATTTCTATTTGAAGCTGAAATGGCATGTGCCATGTGGACCAAATAGTGTCATCACTTTTCCTAGTGTTCCATGGATGAAGCCATGGTACTGGTGGTCATGGCCGGTTCTCCCCTTGGGGCTTTCTTGGCACGAGCAGAGGCGTCAGACAATAGGGTATGGTGCGGAGATTCCTCTGGTTATAGCCGAGTCACTGTTTTACTTGGTCACTCTGGCTCTATCGATGATTGCTTGCAGAGGCTCCCAAACAGCTTCATCTAAGTTCTGCCTCTTGAAATCAGAACAGGGTTTGTCATTCTATTCTATTGTTCCCAAGCTGTTGGTTCTATTTAGTATGGTGGGAAGTTACTTGCTTCCATTTTTGCTTGTTCCAAGAACAATTAATCCTCTGATTGGTTGGGGACTTTATTTACTGGGTTCCATGTCAATTGGGGTTCTTGTTATAAATGCCTTTCAGCTCCCAGTTTTGCCCGTGTTCACCCCCTGGTTGGGTATATTCGGTGTACTTCTTGTCATGGCCTTTCCTCTTTATTCCAATGGCATAGTAAGAGCAATATCGGTAGCAGTATATGCTGCTCTGGCTGCTCCGTTTGCATGGTGGGCTCTTGGAAGAGCAATGTCAACATTATCAAAATCTGATCAGCCACAGTTTCAGATCACCAAAATTTGTTGATGGAAATCATTCTAAACATTGCCATGAAATATACTCTTATCTCAGAAAACACTTTGCAGTCCCTGCAGTTCTTTTTATACAACCTACTGAGCTTCTTTTGAGTTTTCTGGACTCCTCGCAAGAGGTGAGCGGGCTGAATCAGAAGGCTTCAAATTCTGATGGATTTCTAATTCCGTTAAAGATATGCAGTGGCAATGTTTGAGTGAACTCTGTAATAGAAAGAGTTTAGTGGTATATCTCAAAATTGTGACATTCTCAATGGGATATATATATATATATATATATATATATA

Fln Alignment:

Contig29085___PTKRSSKNAYATMMYMGTPRDYEFYVAIRVMLRSLIRLRVNADLVVIASKDVPQQWIRTLQSDGVIVKPVDNIENPYRNQPGFNKRFTLTLNKLYAWTLVEYDRIVMLDADNLFLQNVDELFQCGQFCAAFINPCIFHTGLFVLQPSVAVFHDMMHELKTLRKNRDGADQGFLVSYFNDLLDSPMFYPPANGSKLN-----GIYRLPLGYQMDASYFYLKLKWHVPCGPNSVITFPSVPWMKPWYWW-SWPVLPLGL
B8LLU5_______________PRSRKTLEAYATLLYGD-----EFLLGVRVLGKSIRDTGTTRDMVALVSDGVSPYAVQLLQADGWIVEHIGLLANPNQKRP---KRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRSIDDLFQCRKFCANLKHSERLNSGVMVVEPSESVFKDMMAKVTTL-PSYTGGDQGFLNSYYGDFPNARLFEPNLSADELKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYTLGP-LKPWDWWTAWLLKPVDL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
133	25			75	0.996473
134	25		75		0.996473
135			75	25	0.996473
329	20			80	0.995493
430	50		50		1.0
690	25			75	0.996473
691	25	75			0.996473
692			75	25	0.996473
795	20			80	0.995493
796	20			80	0.995493
797		80		20	0.995493
798		80	20		0.995493
1758		58		41	1.0
1776		16		83	0.999991
1831		84		15	0.999986
2018			11	88	0.923564
2077	16			83	0.994512
2163		10	90		0.90298
2165			90	10	0.90298
2166			10	90	0.90298
2167	10			90	0.90298
2170	90			10	0.90298
2173			10	90	0.90298
2175	90			10	0.90298
2176	90			10	0.90298
2177		10		90	0.90298
2178	10			90	0.90298
2179		10	90		0.90298
2180			90	10	0.90298
2181		10	90		0.90298
2182	10		90		0.90298
2232		75		25	1.0
2479		60	40		1.0
2485		80	20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
2684	2712	AT AT AT AT AT AT AT AT AT AT AT AT AT AT A	29

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain