SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28978

Length: 504 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene28978
CGTCGTGACCTTGGCTGTCACTCAAGATGAGCGGAGGTAGGCACTACAGAGGAGTCCGGCAGCGGCCGTGGGGTAAATTCGCAGCTGAAATCAGAGACCCCACCAAGAAGGGGACCAGAGTTTGGCTCGGCACTTTCATCACCGCTGAAGAGGCTGCTCTCGCATATGACCTCGCTGCCTTCAGAATGCGCGGAGCCAGGGCTCTCGTTAACTTCCCCCTCGCTCTCAATTCCAGTACAGAAAATGAATCGGCCGTAGGTCACATGGCGCACAAAAGGAGGAGAGTCAAAGAAGAAACGGCTGAGGGCGGGGCGGCTTGTAGTCGTAGGAGACGCGGAAATGGAAGCGGAACCTGAAGCTTCGGGAATGGATTAGCGTCGATAAATTTAATTATTTTAATAATAATATGATTATGAAAATGTAGGGTTGAGAATGGAGACTGAAGTGGCAATATTTCCATTGAATTGTACTCTGATTTCCAATATCAAAATTGAATTGGACTCT

Ace file of the UniGene sp_v3.0_unigene28978 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF transcription factor n=1 Tax=Camellia sinensis RepID=D3Y3E0_CAMSI	-	-	9.0e-21	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.3985e-42	-

Source	Gene names
Sma3	24.t00032; 24.t00040; 25.t00062; 26.t00057; 27.t00030; ACRE1; Aa1_7580; Aa6_7580; At1g04370; At1g06160; At2g44840; At4g17490; At4g17500; At5g07310; At5g07580; At5g13330; At5g44210; At5g47220; At5g47230; At5g51190; At5g61590; At5g61600; At5g61890; B1234D02

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G17500.1	ATERF-1, ERF-1 ethylene responsive element binding factor 1 chr4:9759405-9760211 FORWARD LENGTH=268	2.0e-24	83%
RefSeq	Arabidopsis thaliana	NP_567530.4	ethylene-responsive transcription factor 1A [Arabidopsis thaliana]	3.0e-24	83%
RefSeq	Populus trichocarpa	XP_002332558.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	9.0e-25	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMA3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 118 - 206

Fln protein: S*PWLSLKMSGGRHYRGVRQRPWGKFAAEIRDPTKKGTRVWLGTFITAEEAALAYDLAAFRMRGARALVNFPLALNSSTENESAVGHMAHKRRRVKEETAEGGAACSRRRRGNGSGT*

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATGAGCGGAGGTAGGCACTACAGAGGAGTCCGGCAGCGGCCGTGGGGTAAATTCGCAGCTGAAATCAGAGACCCCACCAAGAAGGGGACCAGAGTTTGGCTCGGCACTTTCATCACCGCTGAAGAGGCTGCTCTCGCATATGACCTCGCTGCCTTCAGAATGCGCGGAGCCAGGGCTCTCGTTAACTTCCCCCTCGCTCTCAATTCCAGTACAGAAAATGAATCGGCCGTAGGTCACATGGCGCACAAAAGGAGGAGAGTCAAAGAAGAAACGGCTGAGGGCGGGGCGGCTTGTAGTCGTAGGAGACGCGGAAATGGAAGCGGAACCTGA___AGCTTCGGGAATGGATTAGCGTCGATAAATTTAATTATTTTAATAATAATATGATTATGAAAATGTAGGGTTGAGAATGGAGACTGAAGTGGCAATATTTCCATTGAATTGTACTCTGATTTCCAATATCAAAATTGAATTGGACTCT

Fln Alignment:

Contig28978___KMSGGRHYRGVRQRPWGKFAAEIRDPTKKGTRVWLGTFITXXXXXXXXXXXAFRMRGARALVNFPLALNSSTENESAVGHMAHKRRR
A9NMA3_______________QISRASHYRGVRRRPWGKFAAEIRDPAKKGARVWLGTFNTAEEAAHAYDRAAFRIRGARALVNFPLAFASNSENGSAVSHMGQKRKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain