SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28912

Length: 2177 nt

UniGene Fasta

>sp_v3.0_unigene28912
TTTAGGGAGGTGATCCAAGACGCGGACGTTTACCTTGGCGCCTAAGCCAGACACATGGAAAAGGGTTTGCAGGGTTTAAGGTTTGAACGGCGTAGGGTATAAGGGCCCACATCAGTTACCATTCCAATGATAACATAACAAAACAATAGCGGAGACCATAGTTCGAAACTCCATCTGGGTCTGAAATCGACCAAAGCAGGTTAAATCATGGCTACGAGGAGTGCCAATGCCATACGTGTACTTGGATCAGTCAACTCGCTAATATCACCAAAAATAAATGGAGAAGCACAATCTATGATCACCCAGTTGAGCCACACTGTTCTCCCAGTTCAGAGATTTCACTTTCCTTGGTCGACTCGATCAGAACCAATTCAAATACGCTGTTTCAGAAGTGGTAGGCATCGAGATGATCCCAGCATAAGGTATGACATTCCAACACCAACAAACTGGGGCATACGCATCGTGCCTGAAAAGATTGCTTTTGTTGTAGAGCGATTTGGGAAATATGTCAAGACTCTTGATGCAGGCATTCACATCTTGATACCTTTTGTTGATCGTATTGCTTATGCGCATTCTTTGAAAGAGGAAGCTATTCCTATTCCAGATCAATCGGCAATTACAAAAGACAATGTCAGTATTTCCATTGGTGGTGTGCTTTATGTGAAGATTGTTGATCCTTTTAGAGCATCATATGGTGTTGAGAATCCAATTTATGCTGTTATTCAGCTTGCACAGACAACCATGCGCAGTGAACTGGGTAAGATCACATTGGATAAAACATTCGAAGAAAGAGACACTCTCAATGAAAATATTGTGAAATCAATAAATGAAGCTGCAACTGACTGGGGCTTACGTTGTTTACGATATGAAATAAGGGACATCGATCCACCAGCAGGTGTAAAAGCAGCCATGGAGATGCAGGCAGAGGCAGAACGGAGAAAGCGAGCGCAAGTGCTGGAGTCTGAAGGAGTACGCCAATCAAATATCAATATTGCAGATGGAAAGAAAAGTGCTGTGATACTGGAGTCAGAAGCTGCCATGATGGACCAAGTCAACAGAGCCCGAGGAGAAGCTGAAGCTATTCTAGCAAGGGCTGAAGCAACTGCGAAGGGTATTGGATTGCTTTCAGAAGCTATTCAATCAAATGGTGGAGTAGAGGCTGCGAGTCTGAGAATTGCTGAGCAGTATATTCAAGCATTTAGTATGGTTGCAAAGGAGGGAACAACAATGCTGCTTCCAAGTAATGTTTCAAATCCTGCAAGTATGATGGGACAGGCACTATCCATATACAAAAGTTTAATTGGACAAAAAGATGGGAGTGGAAAAGAAGCTGTAGTGCCAACAGTCCAAAAGAGGAGCAGGTATCAAAAAGATGATGGCTCTGCAAATCAACATGCTACCGAGGAAGATTCTGTTAGTTCTGTGCATAGTGCAAGCATGAATGATTCAAGATCTGGTGGCAATCCAAATTTATTGCCTCCTGCAAGAGGTTTTAGTCTTCAGAGTCCTCCGGAGTGATTCAAGGAAGCATGGATGATTGAAGGACCTGGTGGTGATCTCAATTTCTTGCCTCGTGTGAGAGGTTTTAGTCTTCAGAGTCCTCCAGAGTGATTGGATTTATCTGATCTGGGCAATTTTTTGTGTATCTTCACAGATGCCTATTAGATGGCTGCACCATGTCCTTTATGTACTAGTTTTAGTATTCGATATATTTTTCCCATTCTATTTGCAATGTGATGAGTAATTCTGGAATTTAAATATTTCACACCTGCTGTCATGGTTTGAGGGCATCTTATTTTTTAGCCTTCCAATCAAATATTGGAGAAGCTTATTACAGAAAATTTGAACTTTCCTAATTGGCAGTTTCCATGATGTTCACATTGACACATGATTTTCTTTTTGAGAAGTTAATAAATATATGAATCAACAGATCCCCTTTGCCAGAATATCTGGATGGAGGCTGGGTCAACCACCAGTGACAATAGCGACTGGTAGTCCAATGGGGCTCAACCGGATGAGAACTGGAGACCTCAAGGCGAACATTGCCTTCAAACAGTGCATTTGGACTCATTCTCTCACTTTACTATAACTATATGAATCATTTGTGTAAAGTGTATTGGATAATAATCCCTCTATTTATTATTTGATAATTGTAGTAGTTGAATTTAGTTAACAAC

Ace file of the UniGene sp_v3.0_unigene28912

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPFH/Band 7/PHB domain-containing membrane-associated protein [Arabidopsis thaliana] gb\|AAK59431.1\| unknown protein [Arabidopsis thaliana] gb\|AAL15215.1\| unknown protein [Arabidopsis thaliana] gb\|AAM63260.1\| stomatin-like protein [Arabidopsis thaliana] db	-	-	0.0	68%
FL-Next	sp=Hypersensitive-induced response protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%
Sma3	Stomatin-like protein	-	-	1.056e-13	-

Source	Gene names
Sma3	AT4g27580; At4g27585; At5g54100; At5g54100/MJP23_8; CHLREDRAFT_83258; GSVIVT00024977001; GSVIVT00034121001; MICPUCDRAFT_70813; MICPUN_113404; Os08g0158500; Os08g0255500; OsI_02998; OsI_27889; OsJ_26114; OsJ_31573; P0498E12.110; PHYPADRAFT_15179; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Band 7 protein	IPR001107	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Stomatin	IPR001972	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family chr4:13766984-13769832 REVERSE LENGTH=411	78%
RefSeq	Arabidopsis thaliana	NP_567778.1	SPFH/Band 7/PHB domain-containing membrane-associated protein [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002317847.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SRH6

Fln msg: your sequence is longer than subject: 437 - 285

Fln protein: MATRSANAIRVLGSVNSLISPKINGEAQSMITQLSHTVLPVQRFHFPWSTRSEPIQIRCFRSGRHRDDPSIRYDIPTPTNWGIRIVPEKIAFVVERFGKYVKTLDAGIHILIPFVDRIAYAHSLKEEAIPIPDQSAITKDNVSISIGGVLYVKIVDPFRASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNENIVKSINEAATDWGLRCLRYEIRDIDPPAGVKAAMEMQAEAERRKRAQVLESEGVRQSNINIADGKKSAVILESEAAMMDQVNRARGEAEAILARAEATAKGIGLLSEAIQSNGGVEAASLRIAEQYIQAFSMVAKEGTTMLLPSNVSNPASMMGQALSIYKSLIGQKDGSGKEAVVPTVQKRSRYQKDDGSANQHATEEDSVSSVHSASMNDSRSGGNPNLLPPARGFSLQSPPE*

Protein Length: 438

Fln nts: TTTAGGGAGGTGATCCAAGACGCGGACGTTTACCTTGGCGCCTAAGCCAGACACATGGAAAAGGGTTTGCAGGGTTTAAGGTTTGAACGGCGTAGGGTATAAGGGCCCACATCAGTTACCATTCCAATGATAACATAACAAAACAATAGCGGAGACCATAGTTCGAAACTCCATCTGGGTCTGAAATCGACCAAAGCAGGTTAAATC_-_ATGGCTACGAGGAGTGCCAATGCCATACGTGTACTTGGATCAGTCAACTCGCTAATATCACCAAAAATAAATGGAGAAGCACAATCTATGATCACCCAGTTGAGCCACACTGTTCTCCCAGTTCAGAGATTTCACTTTCCTTGGTCGACTCGATCAGAACCAATTCAAATACGCTGTTTCAGAAGTGGTAGGCATCGAGATGATCCCAGCATAAGGTATGACATTCCAACACCAACAAACTGGGGCATACGCATCGTGCCTGAAAAGATTGCTTTTGTTGTAGAGCGATTTGGGAAATATGTCAAGACTCTTGATGCAGGCATTCACATCTTGATACCTTTTGTTGATCGTATTGCTTATGCGCATTCTTTGAAAGAGGAAGCTATTCCTATTCCAGATCAATCGGCAATTACAAAAGACAATGTCAGTATTTCCATTGGTGGTGTGCTTTATGTGAAGATTGTTGATCCTTTTAGAGCATCATATGGTGTTGAGAATCCAATTTATGCTGTTATTCAGCTTGCACAGACAACCATGCGCAGTGAACTGGGTAAGATCACATTGGATAAAACATTCGAAGAAAGAGACACTCTCAATGAAAATATTGTGAAATCAATAAATGAAGCTGCAACTGACTGGGGCTTACGTTGTTTACGATATGAAATAAGGGACATCGATCCACCAGCAGGTGTAAAAGCAGCCATGGAGATGCAGGCAGAGGCAGAACGGAGAAAGCGAGCGCAAGTGCTGGAGTCTGAAGGAGTACGCCAATCAAATATCAATATTGCAGATGGAAAGAAAAGTGCTGTGATACTGGAGTCAGAAGCTGCCATGATGGACCAAGTCAACAGAGCCCGAGGAGAAGCTGAAGCTATTCTAGCAAGGGCTGAAGCAACTGCGAAGGGTATTGGATTGCTTTCAGAAGCTATTCAATCAAATGGTGGAGTAGAGGCTGCGAGTCTGAGAATTGCTGAGCAGTATATTCAAGCATTTAGTATGGTTGCAAAGGAGGGAACAACAATGCTGCTTCCAAGTAATGTTTCAAATCCTGCAAGTATGATGGGACAGGCACTATCCATATACAAAAGTTTAATTGGACAAAAAGATGGGAGTGGAAAAGAAGCTGTAGTGCCAACAGTCCAAAAGAGGAGCAGGTATCAAAAAGATGATGGCTCTGCAAATCAACATGCTACCGAGGAAGATTCTGTTAGTTCTGTGCATAGTGCAAGCATGAATGATTCAAGATCTGGTGGCAATCCAAATTTATTGCCTCCTGCAAGAGGTTTTAGTCTTCAGAGTCCTCCGGAGTGA___TTCAAGGAAGCATGGATGATTGAAGGACCTGGTGGTGATCTCAATTTCTTGCCTCGTGTGAGAGGTTTTAGTCTTCAGAGTCCTCCAGAGTGATTGGATTTATCTGATCTGGGCAATTTTTTGTGTATCTTCACAGATGCCTATTAGATGGCTGCACCATGTCCTTTATGTACTAGTTTTAGTATTCGATATATTTTTCCCATTCTATTTGCAATGTGATGAGTAATTCTGGAATTTAAATATTTCACACCTGCTGTCATGGTTTGAGGGCATCTTATTTTTTAGCCTTCCAATCAAATATTGGAGAAGCTTATTACAGAAAATTTGAACTTTCCTAATTGGCAGTTTCCATGATGTTCACATTGACACATGATTTTCTTTTTGAGAAGTTAATAAATATATGAATCAACAGATCCCCTTTGCCAGAATATCTGGATGGAGGCTGGGTCAACCACCAGTGACAATAGCGACTGGTAGTCCAATGGGGCTCAACCGGATGAGAACTGGAGACCTCAAGGCGAACATTGCCTTCAAACAGTGCATTTGGACTCATTCTCTCACTTTACTATAACTATATGAATCATTTGTGTAAAGTGTATTGGATAATAATCCCTCTATTTATTATTTGATAATTGTAGTAGTTGAATTTAGTTAACAAC

Fln Alignment:

Contig28912___IVPEKIAFVVERFGKYVKTLDAGIHILIPFV--DRIAYAHSLKEEAIPIPDQSAITKDNVSISI-GGVLYVKIVDPFR-ASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNENIVKSINEAATDWGLRCLRYEIRDIDP
Q9SRH6_______________LVKQSDVAVKERFGKFQKVLNPGLQF-VPWVIGDYVAGTLTLRLQQLDVQCETK-TKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQKNEIAKSVEEELDKAMTAYGYEILQTLIIDIEP

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
841	12		87		0.992554
843		87	12		0.992554
994		20	80		0.995493
995		80		20	0.995493
996	80			20	0.995493
998	80	20			0.995493
1000		20	80		0.995493
1002	80			20	0.995493
1003	80		20		0.995493
1004	80			20	0.995493
1007	83		16		0.994512
1009	83		16		0.994512
1050	80	20			0.995493
1200		66		33	1.0
1326	80		20		0.995493
1393		88	11		0.923564
1395		11		88	0.923564
1396	11		88		0.923564
1397		88		11	0.923564
1415	12			87	0.992554
1416		12		87	0.992554
1452	87			12	0.992554
1458	12			87	0.992554
1563		13		86	0.999973
1564			13	86	0.999973
1567			13	86	0.999973
1573		85		14	0.999981
1580		14	85		0.999981
1637		10		90	0.90298
1638			10	90	0.90298
1640		10		90	0.90298
1646		10		90	0.90298
1650		90	10		0.90298
1651	90		10		0.90298
1653	90			10	0.90298
1656		10		90	0.90298
1657			90	10	0.90298
1726		23		76	1.0
1735		15		84	0.999986
1814	90		10		0.90298
1824	10		90		0.90298
1865		14		85	0.993533
1935	25	75			0.996473
1937	25	75			0.996473
2171	33			66	0.997452
2175		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain