SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28900

Length: 677 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28900 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MDR-like ABC transporter n=1 Tax=Taxus cuspidata RepID=E6Y0T0_TAXCU	-	-	0.0	81%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	81%
Sma3	Multidrug resistance protein 1, 2, putative	-	-	2.608e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphate-transporting ATPase.	EC:3.6.3.27	-	1.196e-16	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	9.337e-22	-

Source	Gene names
Sma3	At1g02520; At1g02530; At2g47000; At3g62150; At4g01820; At4g01830; At4g18050; At5g46540; Cjmdr1; F14M4.17; F15J5.20; GSVIVT00003365001; GSVIVT00003368001; GSVIVT00003375001; GSVIVT00003377001; GSVIVT00019727001; GSVIVT00019729001; GSVIVT00028243001; K11I1.

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	auxin efflux	GO:0010315	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02520.1	PGP11 P-glycoprotein 11 chr1:524134-528745 FORWARD LENGTH=1278	52%
RefSeq	Arabidopsis thaliana	NP_171753.1	P-glycoprotein 11 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002320939.1	multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]	59%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain