SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28840

Length: 2898 nt

UniGene Fasta

>sp_v3.0_unigene28840
GGAAATCGAAATCCATTCCATGGGCTGATTATCGAGGAAAACCAGAATCTTCTCATTTTCCCTTTGCTGTGTTTTTCTCTGGACTAACGATGAAGATGTCTCTACCTTCTAATGTTCTCACTCTCAGCGCGGATTCCAATTCGATCTCCTCGTCAGGAGACGAACTCGCCGCAAAGGTGAGGAAGCCATACACAATCACAAAGCAGAGAGAGAGGTGGAGTGAAGATGAGCATCTCAAGTTTCTGGAAGCCCTGAAAATGTATGGCCGAGCATGGAGGCGAATCGAAGAGCACATAGGCACGAAAACGGCTGTCCAGATACGAAGCCATGCTCAGAAGTTCTTCTCCAAGTTGGTAAGGGGATCTTCAAATAAAGGTGTGTCTTCCACAGAGAGAGCAGAGGATATTGAGATTCCGCCACCTCGGCCTAAAAGGAAACCAAGGCATCCTTACCCCCGTAAAGCTGCGGGTACTTCCGATCAGAGTGGATCACCAGCAAGTAATGAAGGGGATGTATTTCCTTCAGTTGTCTCATCTGTGCCTTTATTGAGCCTGGGAGATGGACCATGCAAGCGTGCTCGATTTGATCAACACAATGCAAATACAAGGCTTTCTAACAGTGATAATGGACAAGACATCAAAATGGAGTCACCTAGATTGAACAGCTCGCCATTGAGTCTCAAACTTTTTGGCCAAACAATGTTCGTCTCTAATAGTGAAGGGTCGAATACTTTCTTGACTGAACCAGCTGTAAGTAACAATCGAGGAGATTTTCAGGAATTTGTTCCAGTGCAACAAGAAACCAGTTCTTTGAGGACCAAAGTCAAAAATCAAATACTGGATGATGTAACTGAAATCTTACACGGCTATGGTCTAAACTCTCATACCACTGCTGCGGCAAACACTATCTTACATTCTGGATCTGTATCAACTGCAGACAAGGATTCCAGAGAAAAAACAGACTCAGACGAACAACTTTCCAGTGAACTGGACACCAATTCAAGTTGTCTAACTAGAAGTCGGGAATCTCCCAGTATTTTCTCAGGTTACCCAAGGCATGTCCCAGTGCAGCATGTTGTAGATGGAGTGGTTTCAGAAAATGTGAATGAGGTTGTTAACATGACGCCATTGTCTGAGTCATCTTTGGCTATGAGCATGTCTAATAACACATCCTCATTGTCTAAGTCTGAGATCATGAGTCCATGCCCTTCTACCTTTTCTCCAGTATTCCCTTGGGTTCAGATGCAGCATGGAGACAAAGCTGTTGCAGAAGCAGTTGCAGTAGCGACAGTTGCTGCAGCCTCCGCCTGGTGGTCCTTGTATGGTGCTGTGCCCTCTCATCTCCACCAAAGAATGTTTTCAGGAGCCACAGATGCAGAGAATATGTCATCTGCATGCAAAGCTGAAACTGTAATGGGAGTTAGAGAACGAAGCCAGTCAAATACGACTGAAAGAGAAGGTGAGACCTTATTTCAAGGTTCACTATCCGAGAACCGCACATCCAGTTTCATACAAGAATCTAATGATGCACGACGTCATACAGAAAAGCAAAGCTGCCAAACCAAAGAAGAGGACCAAATAATGAAAGAGGCAGAGTTAGGAGAAGAAGGGTCAGGGTGTGCTTCAAACACTCCTTCAAGCACTGAACCTGAAATTGATCCTTACTCGTGGACTAACAGTCAGGAGAATACAAGAAATTTTGTGCAGAGCGTACAAGGTAATGGGGGAGGATATGTTCCTGAAGCAGAAGGTTCATCCACAGATGAGGAAGAAACACGTTATAGCGACAATCTACCAACAAAGCAAGGTGGACTCAAAGAAGCCAAAATATGTATTCAGAACAGTAGAAACAACAGTTATTCCAGGGTTGATGGCCATGCCGATGATACATGGAAGGATGTCTTGAGTGAGGGTCAAATTGCATTCAGAGCTTTGTTTGCACAAGAGGTTTTGCCTCAGAGCTTTTCATCTGGAGATGGCATGTTCTCCAAAATAAATGGCAGGGATTCATTCTTTGAGAATTCAAAGCAAAAGTCAAACAGAAGTGTTGAAGGTGAGACATGCCCTCATGTCAAAGGTAGTGGAACCAGTGTCAAACAAGCGTACACAGGTAAAGTACATACACAGAGTCCAAAAGCTTCTTTTGTATCAACTTCCGGGGAGGAGGTACTGGAAGATTCAGAAGGTGCTGTAAGCCATGGGCTGCTGGAAGCATCAGCTGTTAATTTTTGCAAAGCAAACAAATTCTTTGCTTCAAGCTTTTCGAAGTCAAAGTCTGGAGTGGGTTTTGTCCCATATGAGCGATGTTCAATGCAAGCAAGAAATAATGAACTGCATCTGTGATCCCAGAAACCAAAAACTGTGAAGATGTTTTAAGAGAAGAAAAAGGAATCTGATCAAAACAGGAAGTAATTTCTTCCGCAATATCAGTTCTCTTGTGTAGCTCATAGTCAAGGGCTGCATAGATTCAGGTGTCATCCAGTATGCAGGTTGAGTATCTCAACCAGCTAGCTGCTTACTGCTCTTCCATGCAGATTTTGTCGATCATGTAAGCTGGTATTCTGGTGATCTGAGGTCATTCATGCTGCCGAACTAGTTGCAACACAATTCCATACATTCTGACATTGGCTGGGCTGTGGTATACTGTCAGTAACTTGAGAGTGTCTTGTAAAATTATTTGCAATATTCCTCGCAGGATGCAAAGATCAGGGCAAATCAGATGAGGAAACAATGCCTGTACCATAATCAAGCTGTAAATATAAAGCCAGAGTACTGTAATAGAAATGGTCTTAGAAATGGGCTTTCTTTTACCCTTTCAAAGAAGGGATCTCTTTGCCTAGTTGTGAGAAATTTTGTAAGCTATCGTTAATTTACAAGAAAAGCATTTTGACAGCTTTTC

Ace file of the UniGene sp_v3.0_unigene28840

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain	-	-	2.0e-09	26%
FL-Next	sp=Protein LHY; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Sma3	MYB transcription factor	-	-	1.275e-11	-

Source	Gene names
Sma3	At1g01520; At1g18330; At3g10113; At5g37260; CHLREDRAFT_112628; CHLREDRAFT_123164; CT251; EPR1; F22L4.6; GSVIVT00023066001; GSVIVT00026895001; LgLHY H1; LgLHY H2; LpLHY H2; MICPUCDRAFT_51845; MICPUCDRAFT_69240; MICPUN_105915; MYB114; MYB131; MYB133; MYB135

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01060.1	LHY, LHY1 Homeodomain-like superfamily protein chr1:33992-37061 REVERSE LENGTH=645	2.0e-30	73%
RefSeq	Arabidopsis thaliana	NP_001077437.1	protein late elongated hypocotyl [Arabidopsis thaliana]	2.0e-30	73%
RefSeq	Populus trichocarpa	XP_002305260.1	predicted protein, partial [Populus trichocarpa]	8.0e-32	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6R0H1

Fln msg: your sequence is longer than subject: 751 - 645

Fln protein: MKMSLPSNVLTLSADSNSISSSGDELAAKVRKPYTITKQRERWSEDEHLKFLEALKMYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKLVRGSSNKGVSSTERAEDIEIPPPRPKRKPRHPYPRKAAGTSDQSGSPASNEGDVFPSVVSSVPLLSLGDGPCKRARFDQHNANTRLSNSDNGQDIKMESPRLNSSPLSLKLFGQTMFVSNSEGSNTFLTEPAVSNNRGDFQEFVPVQQETSSLRTKVKNQILDDVTEILHGYGLNSHTTAAANTILHSGSVSTADKDSREKTDSDEQLSSELDTNSSCLTRSRESPSIFSGYPRHVPVQHVVDGVVSENVNEVVNMTPLSESSLAMSMSNNTSSLSKSEIMSPCPSTFSPVFPWVQMQHGDKAVAEAVAVATVAAASAWWSLYGAVPSHLHQRMFSGATDAENMSSACKAETVMGVRERSQSNTTEREGETLFQGSLSENRTSSFIQESNDARRHTEKQSCQTKEEDQIMKEAELGEEGSGCASNTPSSTEPEIDPYSWTNSQENTRNFVQSVQGNGGGYVPEAEGSSTDEEETRYSDNLPTKQGGLKEAKICIQNSRNNSYSRVDGHADDTWKDVLSEGQIAFRALFAQEVLPQSFSSGDGMFSKINGRDSFFENSKQKSNRSVEGETCPHVKGSGTSVKQAYTGKVHTQSPKASFVSTSGEEVLEDSEGAVSHGLLEASAVNFCKANKFFASSFSKSKSGVGFVPYERCSMQARNNELHL*

Protein Length: 752

Fln nts: GGAAATCGAAATCCATTCCATGGGCTGATTATCGAGGAAAACCAGAATCTTCTCATTTTCCCTTTGCTGTGTTTTTCTCTGGACTAACG_-_ATGAAGATGTCTCTACCTTCTAATGTTCTCACTCTCAGCGCGGATTCCAATTCGATCTCCTCGTCAGGAGACGAACTCGCCGCAAAGGTGAGGAAGCCATACACAATCACAAAGCAGAGAGAGAGGTGGAGTGAAGATGAGCATCTCAAGTTTCTGGAAGCCCTGAAAATGTATGGCCGAGCATGGAGGCGAATCGAAGAGCACATAGGCACGAAAACGGCTGTCCAGATACGAAGCCATGCTCAGAAGTTCTTCTCCAAGTTGGTAAGGGGATCTTCAAATAAAGGTGTGTCTTCCACAGAGAGAGCAGAGGATATTGAGATTCCGCCACCTCGGCCTAAAAGGAAACCAAGGCATCCTTACCCCCGTAAAGCTGCGGGTACTTCCGATCAGAGTGGATCACCAGCAAGTAATGAAGGGGATGTATTTCCTTCAGTTGTCTCATCTGTGCCTTTATTGAGCCTGGGAGATGGACCATGCAAGCGTGCTCGATTTGATCAACACAATGCAAATACAAGGCTTTCTAACAGTGATAATGGACAAGACATCAAAATGGAGTCACCTAGATTGAACAGCTCGCCATTGAGTCTCAAACTTTTTGGCCAAACAATGTTCGTCTCTAATAGTGAAGGGTCGAATACTTTCTTGACTGAACCAGCTGTAAGTAACAATCGAGGAGATTTTCAGGAATTTGTTCCAGTGCAACAAGAAACCAGTTCTTTGAGGACCAAAGTCAAAAATCAAATACTGGATGATGTAACTGAAATCTTACACGGCTATGGTCTAAACTCTCATACCACTGCTGCGGCAAACACTATCTTACATTCTGGATCTGTATCAACTGCAGACAAGGATTCCAGAGAAAAAACAGACTCAGACGAACAACTTTCCAGTGAACTGGACACCAATTCAAGTTGTCTAACTAGAAGTCGGGAATCTCCCAGTATTTTCTCAGGTTACCCAAGGCATGTCCCAGTGCAGCATGTTGTAGATGGAGTGGTTTCAGAAAATGTGAATGAGGTTGTTAACATGACGCCATTGTCTGAGTCATCTTTGGCTATGAGCATGTCTAATAACACATCCTCATTGTCTAAGTCTGAGATCATGAGTCCATGCCCTTCTACCTTTTCTCCAGTATTCCCTTGGGTTCAGATGCAGCATGGAGACAAAGCTGTTGCAGAAGCAGTTGCAGTAGCGACAGTTGCTGCAGCCTCCGCCTGGTGGTCCTTGTATGGTGCTGTGCCCTCTCATCTCCACCAAAGAATGTTTTCAGGAGCCACAGATGCAGAGAATATGTCATCTGCATGCAAAGCTGAAACTGTAATGGGAGTTAGAGAACGAAGCCAGTCAAATACGACTGAAAGAGAAGGTGAGACCTTATTTCAAGGTTCACTATCCGAGAACCGCACATCCAGTTTCATACAAGAATCTAATGATGCACGACGTCATACAGAAAAGCAAAGCTGCCAAACCAAAGAAGAGGACCAAATAATGAAAGAGGCAGAGTTAGGAGAAGAAGGGTCAGGGTGTGCTTCAAACACTCCTTCAAGCACTGAACCTGAAATTGATCCTTACTCGTGGACTAACAGTCAGGAGAATACAAGAAATTTTGTGCAGAGCGTACAAGGTAATGGGGGAGGATATGTTCCTGAAGCAGAAGGTTCATCCACAGATGAGGAAGAAACACGTTATAGCGACAATCTACCAACAAAGCAAGGTGGACTCAAAGAAGCCAAAATATGTATTCAGAACAGTAGAAACAACAGTTATTCCAGGGTTGATGGCCATGCCGATGATACATGGAAGGATGTCTTGAGTGAGGGTCAAATTGCATTCAGAGCTTTGTTTGCACAAGAGGTTTTGCCTCAGAGCTTTTCATCTGGAGATGGCATGTTCTCCAAAATAAATGGCAGGGATTCATTCTTTGAGAATTCAAAGCAAAAGTCAAACAGAAGTGTTGAAGGTGAGACATGCCCTCATGTCAAAGGTAGTGGAACCAGTGTCAAACAAGCGTACACAGGTAAAGTACATACACAGAGTCCAAAAGCTTCTTTTGTATCAACTTCCGGGGAGGAGGTACTGGAAGATTCAGAAGGTGCTGTAAGCCATGGGCTGCTGGAAGCATCAGCTGTTAATTTTTGCAAAGCAAACAAATTCTTTGCTTCAAGCTTTTCGAAGTCAAAGTCTGGAGTGGGTTTTGTCCCATATGAGCGATGTTCAATGCAAGCAAGAAATAATGAACTGCATCTGTGA___TCCCAGAAACCAAAAACTGTGAAGATGTTTTAAGAGAAGAAAAAGGAATCTGATCAAAACAGGAAGTAATTTCTTCCGCAATATCAGTTCTCTTGTGTAGCTCATAGTCAAGGGCTGCATAGATTCAGGTGTCATCCAGTATGCAGGTTGAGTATCTCAACCAGCTAGCTGCTTACTGCTCTTCCATGCAGATTTTGTCGATCATGTAAGCTGGTATTCTGGTGATCTGAGGTCATTCATGCTGCCGAACTAGTTGCAACACAATTCCATACATTCTGACATTGGCTGGGCTGTGGTATACTGTCAGTAACTTGAGAGTGTCTTGTAAAATTATTTGCAATATTCCTCGCAGGATGCAAAGATCAGGGCAAATCAGATGAGGAAACAATGCCTGTACCATAATCAAGCTGTAAATATAAAGCCAGAGTACTGTAATAGAAATGGTCTTAGAAATGGGCTTTCTTTTACCCTTTCAAAGAAGGGATCTCTTTGCCTAGTTGTGAGAAATTTTGTAAGCTATCGTTAATTTACAAGAAAAGCATTTTGACAGCTTTTC

Fln Alignment:

Contig28840___GDELAAKVRKPYTITKQRERWSEDEHLKFLEALKMYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKLVRGSSNKGVSSTERAEDIEI
Q6R0H1_______________GEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQ-ALDIEI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1629	75		25		0.996473
1712	20		80		0.995493
1817	83		16		0.999991
1878	87			12	0.992554
2040	85			14	0.993533
2041		85	14		0.993533
2042	85			14	0.993533
2319		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain