SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28776

Length: 3134 nt

UniGene Fasta

>sp_v3.0_unigene28776
TTTGGTGATCTCTGCCTTTTATGGTCTAGAGCAAGTGAGATGGATGCTTATGAAGCTACAAGGATTGTGTTCTCCAGGATCCAGAGCTTAGAGCCAGAAAATGTGTCTAAAATTATTGGGTACTTGTTATTACAAGACCATGGTGAACAGGAAATGATTAGGTTGGCTTTCAGTCCGCAGTCCCAGATTCAGTCCATGATCATCAAGGTTAAGAAAGATCTAGGTTTGATGCAGCAGCAAGGTACTCCAGCTCCAACTGTTTCATCTTACCTATCCAGAATCAATCGTCTCCCCAACTTGCCACTGCAGTCTGCTCAGATTTCTCAATCCAGAGCTTTCTCTTCTCCAACCGCCCTTTCACCTCATGCAGCTCCATGGGGATCTCATATTTCTCAACAGACTATGCCTTTATCCAACAATTTTAACTCGATCTTGAATGAGATACAGACTAACACTAGTACTTCTAGTACTATAAATTCTACTAGCAATGGCTATCTTAATTTCAGTCTGCCATCCATGCCAGATCAAGCTAATAGCCTTCCTTACAGCGAGCATCCTGGCCTTGTAGATGAATTTCAATTGCAAGATCAGCTTCCCTTTCTCAATGATTCTCCGGAGTCTGTCCAATCTCATGCTAATTATCTCAACTATCCTGAGATGTTGCAGGCATATTGCAATGGCAATCAGCCATTGACTATAGACCATGTAAGCCCAACAGCAGCTAACAATAGCTATCCTGGTACTACTCATATACCCAAGCAGCCTAGTTCAATTTCAGATATTTACAATCTAACTTCAGAATCTGCACCTGGGCCAGCCTTGGCCTGGAAGCCATGCATGTACTTTGCTAGGGGTTACTGCAAGAATGGGAGCAATTGCAGGTTTCTTCATGGTAACTATGGTGGTCATGTAAGATCAGAGATCAATAATGGCCACACTGAAAAGTTCATGGGATCCAGTAGTGGGCCATTGGAAAAGCTGGAGTTAGAATTGAAGGAATTGCTCAGAGGAAGAGGGTCTCCAGTTTCAGTTGCTTCTCTACCTCAGCTCTATAGTGAGAGGCTTGGGAAGGCTCTTCAGGCCGAGAGGTTTACAAGGTATAGAAGTGAACGAGATTCATCTGATCACTTGGCCAGTTCTGCATCCAATTCTGGATCTCGCCAAATATACTTGACTTTTCCTGCAGAGAGTACTTTCAGGGAGGAGGACGTATCAAATTATTTCAGCATTTTTGGACCCGTGCAGGATGTAAGGATTCCTTATCAGCAGAAGAGGATGTTTGGGTTTGTGACATTTGTATATCAAGAGACTGTTAAGATCATTTTGGCAAAAGGCAATCCTCATTATGTCTGTGATGCCCGTGTTCTTGTCAAACCATACAAAGAAAAAGGATCCAAACCCACAGAGAGGGGCGATTATTCAGGATATGTGACAACTCACAATCTTGATATCAAGGACAGCAATTTTCAACTTGGCCCTCCCAGATTTGTTGAAAACAGCTTAGACCTGGTGACAAGAAGGCAGTTGGAGGAGGAGCAGGATCATATAGAGCAAGCCGTTGAGCTTCAAACAAAACGACTTGCAGAGCTGCAGCTTGGTGACAGAAAGAGACCACAGCTCGTACCTTCAGATCCTCAAGTTTCTATGGCTTCAACAAACTCCAGCCCGGCTCAGCATTATCAAAATCAGTTCTCAAATGGACGCAATAATCATTCAGAAGAGGACGCAACAACGTCAGAAGATTTCAGCAGTTCTACATTAGCAGAACATTTTGGTTATGTGCTACAGGTTTTAGATAGTGAATCTGTCTATGAGGAACACCCAAAACCTGTCAACCATCACCATGACAGACTTCCTATTACTAATGGTGCAATGAGACTGTAAACACTTGAATGCTATTCGAGATGATCTTAAAGCAGCTGGGTAGCAAAGCTGGGATAAGAACCTGAGTTACCAGATAATAGTAGGCAGCTTTCAACGAACTTCATATATATTCAATTCTTATATATTTACGACCGTTATGATATACTCAGCACCCCCAGGAGAAACTAAGGCAAAAAGGTACAAAGGTGCAACCACATTTTAAATTTACTGGAAATACGAATATACAGACAGGAAAGGAGTGGGAGACCCACTTCAGCCTGCCAGCCACTGAATACAAAACTTTCAAGTCTAGCTGCTCTCCAAACTTCAAAGTAGTGCAAACATTTTCAAGAAAAAGTTATATAATACAAAGCTTTTGTGATAAAAAAAAAAAATTATCAGGAGTCATTAGAAAAAAAGGAGGGCTCTTTCTGATACAGGAAAAAAAATGTCACAGACAGCAAGTAAATTTACAGAAAGTGTACAGCAAAGGCAGCAGAGACAGAGACCGAGAATCTATAGCAGGCATGTACCCATTAATGAAATTCTGCATTTCTGGCTACAGTCACACAGTACAGAGGAGAAAAAACACTCAATACTCCTATTCATTCTGTTATTATGCATGGAATTGTCGATTGTTTTTTATACTTAATGAAAATTCAATTTCTGACCAAATCCGCGACATGCTAGTCTGTGACAAACTAAAGGTACCTTCCACATGGGGTCTGACATGTAGCTGGCCCACGAGCAGCAATTATTTGCATTAAATTAAGTTTTTTCTGAAAGGTTCTTCTCCTCCATGTGGGTCAGTTGGCCACCACAGAAACAGTTGCACTGGCCTGTCTCTTCTGCAAGTCAAATAAAGCAGTAAAAAAATGGATTTCGTTAAAGTCAGATAAGATGGAAAACAAAGAATATGTACCTGTAAACTTAATAAATTACTGCTCTCCATGATTATCTAGCTAGCCAGCTTTCAATTCGCTGTACAGGAATCTGATTTCATTTCCTTACGCCATCATAAAAATGTGAACTTTACAAATTAGTACGGGCTATATGAATAATCTAGCTAGCTTGCCAGCCAGCTTTCAATTTGTTGTACAGGATTCTGTTTTTTGAAAGACACAAGCTTTTTATTATGCCACCATAAAAGTCAGTCTCTGCAATGACCACCCAGAGACATTTCTGATAAAGTTGGCTACCGTCCAAAAGACTGTTTGGCGTTTTGATCAGATCAGTCCTTTCATATCAACAGTGGAACAAGATGGGAACAT

Ace file of the UniGene sp_v3.0_unigene28776

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zf-CCCH domain containing protein	-	-	0.0001	50%
FL-Next	Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900	-	-	0.0	38%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.1.-.-	-	9.06e-06	-

Source	Gene names
Sma3	At1g51520; At2g05160; At3g21100; At3g51950; At3g63450; F4F15.60; F5G3.6; GSVIVT00022218001; GSVIVT00027197001; GSVIVT00028662001; LOC_Os11g03220; LOC_Os12g02970; MAA21_80; OsI_11409; OsI_34930; OsI_37303; OsJ_32780; OsJ_35055; PHYPADRAFT_119974; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q10M00-2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 70 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is shorter than subject: 615 - 687

Fln protein: MDAYEATRIVFSRIQSLEPENVSKIIGYLLLQDHGEQEMIRLAFSPQSQIQSMIIKVKKDLGLMQQQGTPAPTVSSYLSRINRLPNLPLQSAQISQSRAFSSPTALSPHAAPWGSHISQQTMPLSNNFNSILNEIQTNTSTSSTINSTSNGYLNFSLPSMPDQANSLPYSEHPGLVDEFQLQDQLPFLNDSPESVQSHANYLNYPEMLQAYCNGNQPLTIDHVSPTAANNSYPGTTHIPKQPSSISDIYNLTSESAPGPALAWKPCMYFARGYCKNGSNCRFLHGNYGGHVRSEINNGHTEKFMGSSSGPLEKLELELKELLRGRGSPVSVASLPQLYSERLGKALQAERFTRYRSERDSSDHLASSASNSGSRQIYLTFPAESTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYQETVKIILAKGNPHYVCDARVLVKPYKEKGSKPTERGDYSGYVTTHNLDIKDSNFQLGPPRFVENSLDLVTRRQLEEEQDHIEQAVELQTKRLAELQLGDRKRPQLVPSDPQVSMASTNSSPAQHYQNQFSNGRNNHSEEDATTSEDFSSSTLAEHFGYVLQVLDSESVYEEHPKPVNHHHDRLPITNGAMRL*

Protein Length: 616

Fln nts: TTTGGTGATCTCTGCCTTTTATGGTCTAGAGCAAGTGAG_-_ATGGATGCTTATGAAGCTACAAGGATTGTGTTCTCCAGGATCCAGAGCTTAGAGCCAGAAAATGTGTCTAAAATTATTGGGTACTTGTTATTACAAGACCATGGTGAACAGGAAATGATTAGGTTGGCTTTCAGTCCGCAGTCCCAGATTCAGTCCATGATCATCAAGGTTAAGAAAGATCTAGGTTTGATGCAGCAGCAAGGTACTCCAGCTCCAACTGTTTCATCTTACCTATCCAGAATCAATCGTCTCCCCAACTTGCCACTGCAGTCTGCTCAGATTTCTCAATCCAGAGCTTTCTCTTCTCCAACCGCCCTTTCACCTCATGCAGCTCCATGGGGATCTCATATTTCTCAACAGACTATGCCTTTATCCAACAATTTTAACTCGATCTTGAATGAGATACAGACTAACACTAGTACTTCTAGTACTATAAATTCTACTAGCAATGGCTATCTTAATTTCAGTCTGCCATCCATGCCAGATCAAGCTAATAGCCTTCCTTACAGCGAGCATCCTGGCCTTGTAGATGAATTTCAATTGCAAGATCAGCTTCCCTTTCTCAATGATTCTCCGGAGTCTGTCCAATCTCATGCTAATTATCTCAACTATCCTGAGATGTTGCAGGCATATTGCAATGGCAATCAGCCATTGACTATAGACCATGTAAGCCCAACAGCAGCTAACAATAGCTATCCTGGTACTACTCATATACCCAAGCAGCCTAGTTCAATTTCAGATATTTACAATCTAACTTCAGAATCTGCACCTGGGCCAGCCTTGGCCTGGAAGCCATGCATGTACTTTGCTAGGGGTTACTGCAAGAATGGGAGCAATTGCAGGTTTCTTCATGGTAACTATGGTGGTCATGTAAGATCAGAGATCAATAATGGCCACACTGAAAAGTTCATGGGATCCAGTAGTGGGCCATTGGAAAAGCTGGAGTTAGAATTGAAGGAATTGCTCAGAGGAAGAGGGTCTCCAGTTTCAGTTGCTTCTCTACCTCAGCTCTATAGTGAGAGGCTTGGGAAGGCTCTTCAGGCCGAGAGGTTTACAAGGTATAGAAGTGAACGAGATTCATCTGATCACTTGGCCAGTTCTGCATCCAATTCTGGATCTCGCCAAATATACTTGACTTTTCCTGCAGAGAGTACTTTCAGGGAGGAGGACGTATCAAATTATTTCAGCATTTTTGGACCCGTGCAGGATGTAAGGATTCCTTATCAGCAGAAGAGGATGTTTGGGTTTGTGACATTTGTATATCAAGAGACTGTTAAGATCATTTTGGCAAAAGGCAATCCTCATTATGTCTGTGATGCCCGTGTTCTTGTCAAACCATACAAAGAAAAAGGATCCAAACCCACAGAGAGGGGCGATTATTCAGGATATGTGACAACTCACAATCTTGATATCAAGGACAGCAATTTTCAACTTGGCCCTCCCAGATTTGTTGAAAACAGCTTAGACCTGGTGACAAGAAGGCAGTTGGAGGAGGAGCAGGATCATATAGAGCAAGCCGTTGAGCTTCAAACAAAACGACTTGCAGAGCTGCAGCTTGGTGACAGAAAGAGACCACAGCTCGTACCTTCAGATCCTCAAGTTTCTATGGCTTCAACAAACTCCAGCCCGGCTCAGCATTATCAAAATCAGTTCTCAAATGGACGCAATAATCATTCAGAAGAGGACGCAACAACGTCAGAAGATTTCAGCAGTTCTACATTAGCAGAACATTTTGGTTATGTGCTACAGGTTTTAGATAGTGAATCTGTCTATGAGGAACACCCAAAACCTGTCAACCATCACCATGACAGACTTCCTATTACTAATGGTGCAATGAGACTGTAAACACTTGAATGCTATTCGAGATGATCTTAAAGCAGCTGGGTAGCAAAGCTGGGATAAGAACCTGAGTTACCAGATAATAGTAGGCAGCTTTCAACGAACTTCATATATATTCAATTCTTATATATTTACGACCGTTATGATATACTCAGCACCCCCAGGAGAAACTAAGGCAAAAAGGTACAAAGGTGCAACCACATTTTAAATTTACTGGAAATACGAATATACAGACAGGAAAGGAGTGGGAGACCCACTTCAGCCTGCCAGCCACTGAATACAAAACTTTCAAGTCTAGCTGCTCTCCAAACTTCAAAGTAGTGCAAACATTTTCAAGAAAAAGTTATATAATACAAAGCTTTTGTGATAAAAAAAAAAAATTATCAGGAGTCATTAGAAAAAAAGGAGGGCTCTTTCTGATACAGGAAAAAAAATGTCACAGACAGCAAGTAAATTTACAGAAAGTGTACAGCAAAGGCAGCAGAGACAGAGACCGAGAATCTATAGCAGGCATGTACCCATTAATGAAATTCTGCATTTCTGGCTACAGTCACACAGTACAGAGGAGAAAAAACACTCAATACTCCTATTCATTCTGTTATTATGCATGGAATTGTCGATTGTTTTTTATACTTAATGAAAATTCAATTTCTGACCAAATCCGCGACATGCTAGTCTGTGACAAACTAAAGGTACCTTCCACATGGGGTCTGACATGTAGCTGGCCCACGAGCAGCAATTATTTGCATTAAATTAAGTTTTTTCTGAAAGGTTCTTCTCCTCCATGTGGGTCAGTTGGCCACCACAGAAACAGTTGCACTGGCCTGTCTCTTCTGCAAGTCAAATAAAGCAGTAAAAAAATGGATTTCGTTAAAGTCAGATAAGATGGAAAACAAAGAATATGTACCTGTAAACTTAATAAATTACTGCTCTCCATGATTATCTAGCTAGCCAGCTTTCAATTCGCTGTACAGGAATCTGATTTCATTTCCTTACGCCATCATAAAAATGTGAACTTTACAAATTAGTACGGGCTATATGAATAATCTAGCTAGCTTGCCAGCCAGCTTTCAATTTGTTGTACAGGATTCTGTTTTTTGAAAGACACAAGCTTTTTATTATGCCACCATAAAAGTCAGTCTCTGCAATGACCACCCAGAGACATTTCTGATAAAGTTGGCTACCGTCCAAAAGACTGTTTGGCGTTTTGATCAGATCAGTCCTTTCATATCAACAGTGGAACAAGATGGGAACAT

Fln Alignment:

Contig28776___MDAYEATRIVFSRIQSLEPENVSKIIGYLLLQDHGEQEMIRLAFSPQSQIQSMIIKVKKDLGLMQQQGTPAPTVSSYLSRINRLPNLPLQSAQISQSRAFSSPTALSPHA-APWGSHISQQTMPLSNNFNSILNEIQXXXXXXXXXXXXXXGYLNFSLPSMPDQANSLPYSEHPG--LVDEFQLQDQLPFLNDSPESVQSHANYLNYPEMLQAY----CNGNQPLTIDHVSPTAANNSYPGTTHIPKQPSSISDIYNLTSESAPGPALAWKPCMYFARGYCKNGSNCRFLHGNYGGHVRSEINNGHTEK-------FMGSSSGPXXXXXXXXXXXXRGRGSPVSVASLPQLYSER---------------LGKALQAERFT-RYRSERXXXXXXXXXXXXXXXRQIYLTFPAESTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYQETVKIILAKGNPHYVCDARVLVKPYKEKGSKPTE----RGDYSGYVTTHNLDIKD--SNFQLGPPRFVENS---LDLVTRRQLEEEQD--HIEQAVELQTKRLAELQLGDRK
Q10M00-2_____________MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLP----PPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWA-----QAQPFSRS-NGSVDEVVGAGEELISPANSGGGAA----------ANAPPFFPRGGDVLLDDFQLQEQLAFLNEGG---------VNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGH--RRSASVNELC-LGGGSSDG--FGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASMMNPGS----RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLG-ARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLK

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
177			33	66	0.997452
178		33	66		0.997452
180			33	66	0.997452
183		66		33	0.997452
184		33		66	0.997452
185	33			66	0.997452
187	66			33	0.997452
320		20		80	0.995493
461		62		37	1.0
472	90		10		0.90298
473			10	90	0.90298
474	90		10		0.90298
616	10		90		0.90298
715	88			11	0.923564
737	14	85			0.993533
738		14		85	0.993533
739	14		85		0.993533
740			85	14	0.993533
875	85			14	0.993533
1406	85		14		0.993533
1410	14		85		0.993533
1411	14		85		0.993533
1412			85	14	0.993533
1413		85	14		0.993533
1414	14		85		0.993533
1416			14	85	0.993533
1420	11			88	0.923564
1422	88	11			0.923564
1424	11		88		0.923564
1425	88	11			0.923564
1427	88		11		0.923564
1430			11	88	0.923564
1432	88		11		0.923564
1434	88		11		0.923564
1523	87		12		0.999964
1712	90		9		0.999872
2268	66		33		0.997452
2739	25		12	62	1.0
2740	12		12	75	0.975346
2812		90		9	0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain