SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28754

Length: 1038 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28754

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Translation elongation factor G, putative n=1 Tax=Ricinus communis RepID=B9RVY0_RICCO	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Protein synthesis factor, GTP-binding	-	-	6.577e-19	-

Source	Gene names
Sma3	At1g45332; At1g62750; At2g45030; CHLREDRAFT_107717; CHLREDRAFT_97127; EFG1; F2G19.2; FUSA; GSVIVT00007283001; GSVIVT00019173001; LOC_Os03g36780; MICPUCDRAFT_26499; MICPUCDRAFT_33156; MICPUN_54103; MICPUN_56116; MtrDRAFT_AC151000g16v2; MtrDRAFT_AC151000g21

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFG/EF2	IPR004540	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Protein of unknown function DUF952	IPR009297	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45030.1	Translation elongation factor EFG/EF2 protein chr2:18572411-18576756 FORWARD LENGTH=754	79%
RefSeq	Arabidopsis thaliana	NP_182029.1	elongation factor EF-G [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002304413.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 421 aas, your sequence is shorter than subject: 346 - 785

Fln protein: LYVLCFQGF*VQLGFSVEVMSRIIAARLLAPARALISKHYGPAVPSPFLSSYSILRQLAGLARPNEDKEAWRESMERIRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLIFINKLDRMGADPWKVLDQAKYKLRHNCAAVQVPIGLEGELQGLVDLVHCKAIYFHGAHGEKIISGEIPSDLSSVVTEKRRELIEAVSEVDDVLAERFLNDEPITADDLEMAIRRATISLKFVPVFMGSAYKNKGVQLLLDGVL

Protein Length: 347

Fln nts: CTTTACGTCCTCTGTTTTCAGGGGTTTTAGGTGCAATTAGGGTTTAGTGTCGAAGTCATGTCAAGGATCATTGCAGCTCGTCTTCTTGCACCTGCCCGAGCTCTGATATCCAAACATTATGGCCCAGCTGTACCTTCTCCATTCCTTTCCTCATACTCAATTTTGAGGCAGCTAGCTGGATTAGCTCGGCCTAATGAGGACAAAGAAGCATGGAGGGAGTCCATGGAAAGAATTCGCAACATCGGAATATCAGCACACATTGACTCCGGGAAAACTACTTTGACGGAAAGAATTCTATTCTACACTGGAAGAATTCATGAAATTCATGAAGTCCGCGGGAAGGATGGCGTCGGTGCCAAGATGGACTCCATGGACTTGGAAAGAGAAAAAGGAATCACTATCCAGTCTGCCGCCACTTACTGCACTTGGAATGGCTATCAGGTTAACATTATTGATACGCCTGGTCATGTGGACTTTACCATTGAAGTGGAGCGAGCATTGCGTGTCTTGGATGGTGCCATTTTAGTCCTTTGTAGTGTTGGTGGAGTGCAAAGCCAGTCTATTACAGTTGATCGTCAGATGCGGAGGTATGAGGTTCCTAGGCTTATCTTTATCAATAAGCTGGATCGAATGGGAGCTGATCCATGGAAGGTTCTTGACCAGGCGAAATATAAGTTACGGCATAACTGTGCGGCTGTGCAAGTTCCCATTGGACTAGAGGGGGAGCTTCAGGGCCTTGTTGATCTCGTGCACTGCAAAGCAATTTATTTCCACGGTGCTCATGGTGAGAAAATAATCTCAGGTGAAATACCATCAGATCTATCTAGCGTAGTAACAGAAAAGAGACGAGAGCTTATAGAAGCAGTTTCAGAAGTTGATGATGTACTAGCTGAGAGATTTCTCAATGATGAGCCTATAACTGCTGATGATCTTGAGATGGCTATTCGAAGGGCCACAATATCACTTAAGTTCGTTCCTGTCTTTATGGGTAGTGCATACAAAAACAAGGGGGTACAGCTCTTGCTGGATGGAGTACTA

Fln Alignment:

Contig28754___RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLIFINKLDRMGADPWKVLDQAKYKLRHNCAAVQVPIGLEGELQGLVDLVHCKAIYFHGAH-GEKIISGEIPSDLSSVVTEKRRELIEAVSEVDDVLAERFLNDEPITADDLEMAIRRATISLKFVPVFMGSAYKNKGVQLLLDGVL
B8LKZ4_______________RNIGIMAHIDAGKTTTTERILFYTGKNYKIGEVH--DGT-ATMDWMEQEQERGITITSAATTCAWNNHRINIIDTPGHVDFTLEVERALRVLDGSICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVLQIPIGAEDRFQGLVDLVKMKSVLWSGEELGAKFSYEDIPADLLDLATEYRNQMIETIVELDDDAMEKYLEGVEPDEKTIKRLIRKGTISISFVPVLCGSAFKNKGVQPLLDAVV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
292		25	75		0.996473
310		75		25	0.996473
617	12	87			0.992554
695		88		11	0.923564
812		20		80	0.999996
834	77			22	0.999999
983		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain