SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28661

Length: 2068 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene28661
AATTAACTCATGGAGAATCTCGCCAGCTAACCTCAAACTCCAACGTGAATTGCCATTTAAAAAATCATAGTTTCAATCAAGGACTTATAATGTCGTCCTCTTCTTTGGCACTGATTGGATTGGATCAGATCGAATTGATGTTTTTGTAAAAACATGATTAGGTAAGCCTAACTGTTTCATCGTCGATTGGGCACTGCATTTTTCTTCAACCTCCGAGTTCAGTTCAGTGTCAGTTTTAGGTTTTGTTTCCGATCGATCGTTCCCCTGGGTTTGAGCGCAAGAAGCTGTGGATCCCGACCAGTATGGAGTCACTTTGAATGAATTACAAGCTCCCTCTTCTTCTCTACTTTCTTGAGAATCAGAGTTAGGGATTCGTGAATTCCTGCGGGCTATTTGAAATCTGCGCCAAACATTCACATTCGCATTCAATCTGACAGCACAGATCTCGTTGTTATCAACGATTTCATACTTCGGATTGACTTTTAGAGTTGCTGCAGGCGGGGCTCTGAAACCCTAACCGTGCTGTGGTGAAATGGGGCGCACGCCTTGCTGCTCGAAAATGGGTCTGAATAGGGGTCCATGGACTCCCGAGGAGGACGATCTTCTTGTAAAATATATCCAAAAGCATGGAGAAGGAGGCTGGAGAACACTTCCTAAGAAAGCAGGGTTGCTGCGTTGTGGCAAAAGCTGTAGACTGCGATGGATGAATTATCTGCGGCCTGATGTTAAACGAGGACAGATTTTACCCGATGAGGAAGACCTTATTCTCAGACTGCATCGCCTTCTCGGAAACAGGTGGTCCTTGATAGCTGGGCGAATGCCTGGGCGCACTGATAACGAAATCAAGAACTACTGGAATACGCACCTTAGTAAAAAACTGATCAGTGAAGGGATAGATCCGAGGACGCACAAACCCCTTGCTGAATCAGAGCTTGAGCAGTTACGCAGTGACAAAAGCCAAGGAGTTGACAACGTAAACTCTGAAGATACCAACAACCCAACTTCTGATTCTCAGAAAATTCAGCTGGAAGAAACTGAAACAGCAATGTCTGACAACATTGAATCGTGCAAAGTTGTTGACAACATTGGCCAATCCCCAGAACTTAGCAAGAACGTCAATGATCATCCTGATACATCAGCAATTGACAGCCTTCACACTGTTGCAAATTCCTCCAGCACTGCCATAGCTACTCAGTCTACTTATGTTGGAAGTGAGGGTACTTACTCTTCCGCTGTTTCTGATTTAGGAAAAGGATCAAGTAAGCTAGGCACAGCAATCAGTTAATGGAGCTGTTCATGTTAATCAACCCTCGCAGATTCCATATTGTTACCCTAATCAGGAATTGAGCTTAGAGGGCCATGATTGGTCTCCATATTTGAGAACAAACACACTGACAAGTAGCTTTTTCATGGCACCCCCATCAGGGCTAGACAGTGCCCCACATTTCTCAGATCAAGGTTATCAAGCAACTGCTAGAAATGCTTTGAGAGGTGGACATCAATATAACGAAAGTTTTTCGGCTAACTTCATTCAACACCGTGCAGCCACTGAAGAAAACCATCAAGAAAGCTAACAAGGAAAACGATGGTGCAAATTCCTGTACCCTTCAAGCCAACATAAATCCACTGGGCCCAACTACTGAAGATTGCAATTCAGATATACTCTCTTATTTTCTGGAGTCCTTTATGACTGAGGATCAGTTGCTGGACGAAGCCAATTACAAGCATGCAACACCAGCTTCAGCTTCTGTTTCACAACATGTGCAGCACCTCTCTCAGGCTCAAGCTCCGAATCATGACTACGACATGTGGTCTGTAGTGTCCCCATCATCACAGTATCCTTCGAATTAATTATCTCAAAGATAAGAAGAACGAACCTTTTGCTATTTTCAGTGCTTCTGTTTAATCTGTATTGTCTTTGCTTTCTATATCTGCTGTAATATCCTTTTGTGGATATCTTATTTAAGAGTACATGTATGTTATTGTATTAAAACGTTTGTGAAAAATACAGTTACTATATATTCTATTGGTTGTTGTTTATGTAACTTTTTAAATTGATTGCTGTGAA

Ace file of the UniGene sp_v3.0_unigene28661 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myb transcription factor [Vitis vinifera]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	MYB transcription factor	-	-	2.167e-25	-

Source	Gene names
Sma3	117M18_17; At1g18570; At1g18570/F25I16_4; At1g22640; At1g34670; At1g35515; At1g74080; At2g16720; At3g01140; At3g02940; At3g13540; At3g23250; At3g61250; At4g05100; At4g09460; At4g21440; At4g34990; At4g38620; At5g10280; At5g15310; At5g16770; At5g61420; AtMY

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	cell morphogenesis	GO:0000902	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	indole glucosinolate biosynthetic process	GO:0009759	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	cellular response to sulfur starvation	GO:0010438	Biological Process	-
Sma3	regulation of glucosinolate biosynthetic process	GO:0010439	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13540.1	ATMYB5, MYB5 myb domain protein 5 chr3:4420239-4421443 FORWARD LENGTH=249	68%
RefSeq	Arabidopsis thaliana	NP_187963.1	transcription repressor MYB5 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002337173.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYS6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas,

Fln protein: MGRTPCCSKMGLNRGPWTPEEDDLLVKYIQKHGEGGWRTLPKKAGLLRCGKSCRLRWMNYLRPDVKRGQILPDEEDLILRLHRLLGNRWSLIAGRMPGRTDNEIKNYWNTHLSKKLISEGIDPRTHKPLAESELEQLRSDKSQGVDNVNSEDTNNPTSDSQKIQLEETETAMSDNIESCKVVDNIGQSPELSKNVNDHPDTSAIDSLHTVANSSSTAIATQSTYVGSEGTYSSAVSDLGKGSSKLGTAIS*

Protein Length: 252

Fln nts: AATTAACTCATGGAGAATCTCGCCAGCTAACCTCAAACTCCAACGTGAATTGCCATTTAAAAAATCATAGTTTCAATCAAGGACTTATAATGTCGTCCTCTTCTTTGGCACTGATTGGATTGGATCAGATCGAATTGATGTTTTTGTAAAAACATGATTAGGTAAGCCTAACTGTTTCATCGTCGATTGGGCACTGCATTTTTCTTCAACCTCCGAGTTCAGTTCAGTGTCAGTTTTAGGTTTTGTTTCCGATCGATCGTTCCCCTGGGTTTGAGCGCAAGAAGCTGTGGATCCCGACCAGTATGGAGTCACTTTGAATGAATTACAAGCTCCCTCTTCTTCTCTACTTTCTTGAGAATCAGAGTTAGGGATTCGTGAATTCCTGCGGGCTATTTGAAATCTGCGCCAAACATTCACATTCGCATTCAATCTGACAGCACAGATCTCGTTGTTATCAACGATTTCATACTTCGGATTGACTTTTAGAGTTGCTGCAGGCGGGGCTCTGAAACCCTAACCGTGCTGTGGTGAA_-_ATGGGGCGCACGCCTTGCTGCTCGAAAATGGGTCTGAATAGGGGTCCATGGACTCCCGAGGAGGACGATCTTCTTGTAAAATATATCCAAAAGCATGGAGAAGGAGGCTGGAGAACACTTCCTAAGAAAGCAGGGTTGCTGCGTTGTGGCAAAAGCTGTAGACTGCGATGGATGAATTATCTGCGGCCTGATGTTAAACGAGGACAGATTTTACCCGATGAGGAAGACCTTATTCTCAGACTGCATCGCCTTCTCGGAAACAGGTGGTCCTTGATAGCTGGGCGAATGCCTGGGCGCACTGATAACGAAATCAAGAACTACTGGAATACGCACCTTAGTAAAAAACTGATCAGTGAAGGGATAGATCCGAGGACGCACAAACCCCTTGCTGAATCAGAGCTTGAGCAGTTACGCAGTGACAAAAGCCAAGGAGTTGACAACGTAAACTCTGAAGATACCAACAACCCAACTTCTGATTCTCAGAAAATTCAGCTGGAAGAAACTGAAACAGCAATGTCTGACAACATTGAATCGTGCAAAGTTGTTGACAACATTGGCCAATCCCCAGAACTTAGCAAGAACGTCAATGATCATCCTGATACATCAGCAATTGACAGCCTTCACACTGTTGCAAATTCCTCCAGCACTGCCATAGCTACTCAGTCTACTTATGTTGGAAGTGAGGGTACTTACTCTTCCGCTGTTTCTGATTTAGGAAAAGGATCAAGTAAGCTAGGCACAGCAATCAGTTAA___TGGAGCTGTTCATGTTAATCAACCCTCGCAGATTCCATATTGTTACCCTAATCAGGAATTGAGCTTAGAGGGCCATGATTGGTCTCCATATTTGAGAACAAACACACTGACAAGTAGCTTTTTCATGGCACCCCCATCAGGGCTAGACAGTGCCCCACATTTCTCAGATCAAGGTTATCAAGCAACTGCTAGAAATGCTTTGAGAGGTGGACATCAATATAACGAAAGTTTTTCGGCTAACTTCATTCAACACCGTGCAGCCACTGAAGAAAACCATCAAGAAAGCTAACAAGGAAAACGATGGTGCAAATTCCTGTACCCTTCAAGCCAACATAAATCCACTGGGCCCAACTACTGAAGATTGCAATTCAGATATACTCTCTTATTTTCTGGAGTCCTTTATGACTGAGGATCAGTTGCTGGACGAAGCCAATTACAAGCATGCAACACCAGCTTCAGCTTCTGTTTCACAACATGTGCAGCACCTCTCTCAGGCTCAAGCTCCGAATCATGACTACGACATGTGGTCTGTAGTGTCCCCATCATCACAGTATCCTTCGAATTAATTATCTCAAAGATAAGAAGAACGAACCTTTTGCTATTTTCAGTGCTTCTGTTTAATCTGTATTGTCTTTGCTTTCTATATCTGCTGTAATATCCTTTTGTGGATATCTTATTTAAGAGTACATGTATGTTATTGTATTAAAACGTTTGTGAAAAATACAGTTACTATATATTCTATTGGTTGTTGTTTATGTAACTTTTTAAATTGATTGCTGTGAA

Fln Alignment:

Contig28661___MGRTPCCSKMGLNRGPWTPEEDDLLVKYIQKHGEGGWRTLPKKAGLLRCGKSCRLRWMNYLRPDVKRGQILPDEEDLILRLHRLLGNRWSLIAGRMPGRTDNEIKNYWNTHLSKKLISEGIDPRTHKPLAESELEQLRSDKSQGVDNVNSEDTNNPTSDSQKIQLEETETAMSDNIESCKVVDNIGQSPELSKNVNDHPDTSAIDSLHTVANSSSTAIATQSTYV
A9NYS6_______________MGRSPCCEKVNTNKGAWTKEEDDRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSQEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKMLSKGVDPQTHRPLGDP------------YNGCNNASISRPAPDYEIPAFENPRTPEIADFFQYNRSESSPIEPAGSKD-EEHPDLN-LDLCISLPSHSTPAASRVSSVV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
787		75	25		0.996473
799		33	66		1.0
1023	16		83		0.994512
1026	20		80		0.995493
1093		80		20	0.995493
1284	80		20		0.995493
1653		14		85	0.993533
1727		16	83		0.994512
1729	83			16	0.994512
1730			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain