SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28619

Length: 863 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28619

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T755_RICCO	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	3.247e-30	-

Source	Gene names
Sma3	At1g22540; At1g22550; At1g22570; At1g62200; At1g72120; At2g02020; At2g02040; At2g37900; At2g40460; At3g54140; At5g01180; At5g46040; At5g46050; B1026C12.10; B1377B10.10; F12K8.11; F12K8.12; F12K8.8; F14H20.11; F19K23.13; F24B22.100; F28P5.2; F5K20_260; F7J

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-
Sma3	response to leucine	GO:0043201	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37900.1	Major facilitator superfamily protein chr2:15864396-15866408 REVERSE LENGTH=575	53%
RefSeq	Arabidopsis thaliana	NP_181326.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002323528.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Separated hits, possible frame ERROR between 156 and 168, and possible frame ERROR between 689 and 737, Distance to subject end: 327 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 288 - 604

Fln protein: LQGFTTGRVSSLPKLITACRFLLSSPLFSRAPGLVCSSRVNDGSVDFKGRPxxxxxSGGWKASLFIIGVEFSERLTYYGIASNLIIYLTTVLHEETARAAKDVNNWAGVTTIMPLLGGFLADAYTGRYWMVLISSVIYLLGLILLTLSVSLSALKPPACPKTNVTCLSMNKLTSTQRSVFFLALYLISIGTGGHKPSLQSFGADQFDEEDKTEKLKKASFFNWWYCGLAxxxxxxxxxxxxxxxxxWGIGFGIPTVAMAISIPIFIYGTPLYRHAVPGGSPITRIAHS

Protein Length: 289

Fln nts: CTCCAGGGTTTCACAACCGGGAGGGTTTCCTCTCTCCCAAAGTTGATTACGGCCTGTAGGTTTCTGCTGTCGAGCCCCCTGTTCTCACGGGCACCTGGACTCGTATGCAGTTCAAGGGTAAACGATGGGTCAGTGGATTTCAAGGGACGACCCGTxxxxxxxxxxxxATCTGGAGGGTGGAAGGCTTCCCTTTTCATTATTGGAGTTGAGTTCAGCGAGAGACTGACATACTATGGAATTGCCTCCAATTTGATCATCTACTTGACCACTGTGTTGCATGAGGAAACTGCAAGGGCTGCCAAGGATGTCAACAACTGGGCGGGTGTCACTACCATCATGCCTCTGCTAGGAGGATTCTTGGCAGATGCATACACTGGACGTTACTGGATGGTTCTAATCTCTTCAGTAATATATCTACTGGGATTAATTTTGTTGACACTTTCAGTGTCCCTCTCTGCCCTTAAGCCTCCTGCTTGTCCGAAAACCAACGTGACGTGCCTAAGTATGAATAAGCTAACTTCCACACAGCGCAGCGTTTTCTTCTTGGCTCTGTATTTGATATCCATTGGCACAGGCGGCCACAAGCCCTCTCTGCAATCCTTCGGCGCAGACCAGTTTGACGAGGAAGATAAAACTGAAAAACTGAAAAAGGCGTCTTTCTTCAACTGGTGGTATTGCGGACTGGCGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGGGGGATTGGGTTCGGGATCCCCACCGTAGCCATGGCTATATCTATTCCTATTTTCATCTACGGAACTCCGTTGTACAGGCATGCGGTTCCAGGAGGCAGCCCTATCACACGCATAGCTCATTCGC

Fln Alignment:

Contig28619___DGSVDFKGRPVxxxxSGGWKASLFIIGVEFSERLTYYGIASNLIIYLTTVLHEETARAAKDVNNWAGVTTIMPLLGGFLADAYTGRYWMXXXXXXXXXXXXXXXXXXXXXXXXKPPACPKTNVTCLSMNKLTSTQRSVFFLALYLISIGTGGHKPSLQSFGADQFDEEDKTEKLKKASFFNWWYCGLAAxxxxxxxxxxxxxxxxWGIGFGIPTVAMAISIPIFIYGTPLYRHAVPGGSPITRIA
A9NWU3_______________DGSTDLKGKPVxxxxTGGWTASLLIIGIEIAERLAYYGIASNLVTYLTNIMHQTTVTAVKNVNVWAGTASMLPLFGAFVADSYLGRYRTILISSIVYLLGLSLLTLSASLSSFRPPPCDITSYTCL---KASGSQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDERDPEERKYRSSFFNWWYFGMCSxxxxxxxxxxxxxxxxWGLGFGIPTMAMAIALTVFLCGTRLYRHKLPGASPLTRIA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
279	50	50			1.0
314	33		66		0.997452
335	66		33		0.997452
418	66	33			0.997452
420	33			66	0.997452
451		66	33		0.997452
505		33		66	0.997452
526	66		33		0.997452
601		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain