SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28572

Length: 3143 nt

UniGene Fasta

>sp_v3.0_unigene28572
AGTGGACTCGGAGCAAGCTCGCGAAGAGAAGGAGAAACATCGAATCAGACGACACTATATATAAAACTATGGCTCCACCCTCTTCCTCCACCCAGGATCGACTCACTCGAACCGGTTTTTATCTCCCCTCTACAGTCACAACCGTAAGGATTGGATGGCTACTTCCACCGCCAGCACCAGCAGTGCTGTGAAATGTCTTCTGATTGTCGGGGTCATATATGGAGTTTTAGGCTCTGTGGCGTATGGGATCATATACAAGAAGCATGTAACTCCTTTACCCCCGGACGCGTCGCCGGATCGATTCTCGGAGGGAAGAGCTATGGACCACCTTTGGCACCTTGCCGAACGTATTGGCATTCGGCAGGAAGGAAGCCATGGTTTGCTGGAGGCTGCACACTATATAAAGGGACAGTTGGAGGAGTTTTCTGGTCGAGCAAATTCAAATGTCAGCATTGAAGTTGATGAAGCACTTGTCAGTGGCTCCTTCAACATGATATTTTTACGTCACAGCATATCCTTGGCATACAGGAACCACACAAATATTCTTGTAAGGATTTCTTCAACATATGCAAAAGATGATGATCCAGCTGTTCTCATCAATGGTCATTTTGACAGTCCATTGGGTTCTCCAGGAGCTGGTGACTGTGGCTCATGTGTAGCATCCATGTTGGAAGTGTTACGTCTTATTATTGATTCCGGCTGGGTGCCACCTCATCCGATTGTTTTTCTTTTTAATGGTGCAGAAGAGCTTTTTCTGTTGGCATCTCATGGATTTATGAAGACACATAAATGGAGGGAAACAATCGGAGCTTTTATAAATGTGGAAGCATCTGGCACAGGAGGAGTTGATTTAGTTTGTCAATCCGGTCCTGGATCATGGCCTTCTTTGGTCTACACCAAGTCAGCAGTTTATCCTATGGCCCACAGTGCAGCACAGGATATTTTCCCTCTGATTCCAGGAGATACAGATTACCGAATATTTGCTGAGGACTATGGGGACATCCCAGGATTGGATATTATATTCATCATTGGAGGCTATTTCTATCACACTGGATATGACAGGCTGGATAAAATTTTGCCTGGAAGTATACAGGCTCGAGGGGAGAACTTAATCAGCTTATTGAAAGCACTTTCAAGTTCCTTCCAGTTAAGAAATGCTCAGCAAAGAGCTGATATCATAACTGCAGCAAATAGCATCCAAGAGGATCGGCCAGTTTTCTTTGACTATCTTTCATTGTTTATGGTTACTTATTCAAAGAAAACAGCCAGGATATTATATGTTTTGCCTATGATCTTTGTTCTTGTTGCTCCTGTATTTTCCATGTCTTCCAATTTCGGGTTTCTCTCCTGGTTCACAGGTCTTTGGTGTATCTTTAAAGGTATGGTGTTGCATGCAGCGGGGCTCATTTTAGCAGTAATTGTACCTGCAGTGTTTGCTTTCTTGAGATTGCTGGTGTCAAATTCAGCTATGAACTGGTATGCTCATCCTTGGTTGGCACTGGTTATGTTTGTTCCAAGTGCTCTTGTTGGCTTATTATTGCCAAAGGCAATTTGGAGAGGCTCACTAGCTAATAATCTGACTACCATTGATAAAGCTTCTAAAGAGGACTGGGCAAGTCATTGGGGATCAGTTGCCTTTTATGCTACAGTATCTTTAGTTTACTTGTATACTGAATTTGGTGTATGCACTTTGACATTTTGGTGGGCAGTATTCCTGATTTTAACGTGGCCAGTTTTCACAATCTCTGTCAAATTCTTTGGTCGACATTTGCTTAGGTCACTCCTGGGTTACATTATTCCACTTATTTTGCCTATTGCATTTTCTCTCTACGTTGGTGGAATTTGTATCCAATTTCTTATTGAAAAGATGGGAATGTTTGGTGCTGTCCCAGAACCCTATGGATATTTTGTTTCGGATATTATTGTTGGCTCTGTGACTGGAATTATTGTTGGTTTGTGTGTTGGTCCTCTGATCCCCATTCTGGGGAGTTGGTTGTCAAATCCTGTACCATTACAGTTGCTTGTACAACTGAGTGTTGTGGCAATGGCATTATCTTCTCAGTTTTTCCCATATAGTGTTGATGCTCCAAAGAGGCTTGTTCTTCAACACACGTTCCAAACTACAGGGAATAAATTATCACATTCTTCATACGATATGGGAATTGCAGATGCCAATACATTGTCTTTTGTATTGAAAAATGCACCTGAAGCAGCAAAGCAGTTGAATATAGACCCAATGTTTTACAAGGAAACAGCAAATTATTCTGATGAAGGAACATTTATGGGATTATATCCAGTTTCTCGTTTATTTTCCCAGAAATTGACGTTTCCTGGAGCAACAGAGGACATTTTTGAACACTATCATAATTTACCCAGGTTATTCATGGATGAGGAAACAACTTCTAGTTCTCAGATCCGGAGGGTACACTTAGAGCTTGACGTCGGTTCTCTTCAAGAGGTTTGGGTTGCAGTTCTTAATATCACAGGGCCTCTTGCTAGTTGGTCCTTTTCTGAGAAGGAATTGCCAGTTCCTGAACAGGTAAATGGTGGGCCGCTGTCTTATATATTACGATTAAGTGGCAGCAGTTCTGAGAATTGGAAGTTTTGGGTCGAGGCAAGCAGTTCTGAAGCTTTGAAGATTGACGTTGCTGTCTTGGATCAACGTCTAGATAAGCGGGCAATAAAATTGAAACAGTGCTTTCCACCTTGGGTTGATGTTATTGCATATTCAAGTTTTTTGTCAAGCTATGTATTCTAAATTAAAATATCAAGAAGAGAAGTAATTATATTTTACTTATTATTTTGTTTCTGAATGTATCCGTTTTATTTCAATGCAAACGAAGGTTTCAATTATATTTTAGTCAATCGTGGTGATGATCAGTAATGTAATTCACAAGCAATTCAAATATGTTTGAAGTCATGCCAAACATATATTCTTAAACAACATTCAGTACCAATCATATTAATCAATTGTGGCCCATATTGTGGGTTCACAGCTTTGTTTGAACTAGTTTAATTTGAAAGCAGCTCGAACCACAGATTTGTTGCTATATTTATTAGCATAGCTTACTATGGGATCTAATTAAAGAATTGCATCAACTCTAGTCCATCTATCCTTCATCAAAGCATGTGCAGAATGGAAT

Ace file of the UniGene sp_v3.0_unigene28572

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam04389, Peptidase_M28, Peptidase family M28	-	-	1.99965e-42	34%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	57%

Source	Gene names
Sma3	B1120F06.141; B1272H04.7; GSVIVT00002838001; MICPUN_86737; Os07g0295800; OsI_25697; OsJ_23904; PHYPADRAFT_167151; POPTRDRAFT_565037; POPTRDRAFT_657359; POPTRDRAFT_658128; RCOM_1080700; T1F15.12; VITISV_011748;

Source	GOs	Term	Type	e value	Identity
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	-
Sma3	Peptidase M28	IPR007484	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67420.2	Zn-dependent exopeptidases superfamily protein chr1:25255264-25260358 FORWARD LENGTH=922	52%
RefSeq	Arabidopsis thaliana	NP_176909.3	Zn-dependent exopeptidase-like protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002311711.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TAV9

Fln msg:

Fln protein: MATSTASTSSAVKCLLIVGVIYGVLGSVAYGIIYKKHVTPLPPDASPDRFSEGRAMDHLWHLAERIGIRQEGSHGLLEAAHYIKGQLEEFSGRANSNVSIEVDEALVSGSFNMIFLRHSISLAYRNHTNILVRISSTYAKDDDPAVLINGHFDSPLGSPGAGDCGSCVASMLEVLRLIIDSGWVPPHPIVFLFNGAEELFLLASHGFMKTHKWRETIGAFINVEASGTGGVDLVCQSGPGSWPSLVYTKSAVYPMAHSAAQDIFPLIPGDTDYRIFAEDYGDIPGLDIIFIIGGYFYHTGYDRLDKILPGSIQARGENLISLLKALSSSFQLRNAQQRADIITAANSIQEDRPVFFDYLSLFMVTYSKKTARILYVLPMIFVLVAPVFSMSSNFGFLSWFTGLWCIFKGMVLHAAGLILAVIVPAVFAFLRLLVSNSAMNWYAHPWLALVMFVPSALVGLLLPKAIWRGSLANNLTTIDKASKEDWASHWGSVAFYATVSLVYLYTEFGVCTLTFWWAVFLILTWPVFTISVKFFGRHLLRSLLGYIIPLILPIAFSLYVGGICIQFLIEKMGMFGAVPEPYGYFVSDIIVGSVTGIIVGLCVGPLIPILGSWLSNPVPLQLLVQLSVVAMALSSQFFPYSVDAPKRLVLQHTFQTTGNKLSHSSYDMGIADANTLSFVLKNAPEAAKQLNIDPMFYKETANYSDEGTFMGLYPVSRLFSQKLTFPGATEDIFEHYHNLPRLFMDEETTSSSQIRRVHLELDVGSLQEVWVAVLNITGPLASWSFSEKELPVPEQVNGGPLSYILRLSGSSSENWKFWVEASSSEALKIDVAVLDQRLDKRAIKLKQCFPPWVDVIAYSSFLSSYVF*

Protein Length: 869

Fln nts: AGTGGACTCGGAGCAAGCTCGCGAAGAGAAGGAGAAACATCGAATCAGACGACACTATATATAAAACTATGGCTCCACCCTCTTCCTCCACCCAGGATCGACTCACTCGAACCGGTTTTTATCTCCCCTCTACAGTCACAACCGTAAGGATTGG_-_ATGGCTACTTCCACCGCCAGCACCAGCAGTGCTGTGAAATGTCTTCTGATTGTCGGGGTCATATATGGAGTTTTAGGCTCTGTGGCGTATGGGATCATATACAAGAAGCATGTAACTCCTTTACCCCCGGACGCGTCGCCGGATCGATTCTCGGAGGGAAGAGCTATGGACCACCTTTGGCACCTTGCCGAACGTATTGGCATTCGGCAGGAAGGAAGCCATGGTTTGCTGGAGGCTGCACACTATATAAAGGGACAGTTGGAGGAGTTTTCTGGTCGAGCAAATTCAAATGTCAGCATTGAAGTTGATGAAGCACTTGTCAGTGGCTCCTTCAACATGATATTTTTACGTCACAGCATATCCTTGGCATACAGGAACCACACAAATATTCTTGTAAGGATTTCTTCAACATATGCAAAAGATGATGATCCAGCTGTTCTCATCAATGGTCATTTTGACAGTCCATTGGGTTCTCCAGGAGCTGGTGACTGTGGCTCATGTGTAGCATCCATGTTGGAAGTGTTACGTCTTATTATTGATTCCGGCTGGGTGCCACCTCATCCGATTGTTTTTCTTTTTAATGGTGCAGAAGAGCTTTTTCTGTTGGCATCTCATGGATTTATGAAGACACATAAATGGAGGGAAACAATCGGAGCTTTTATAAATGTGGAAGCATCTGGCACAGGAGGAGTTGATTTAGTTTGTCAATCCGGTCCTGGATCATGGCCTTCTTTGGTCTACACCAAGTCAGCAGTTTATCCTATGGCCCACAGTGCAGCACAGGATATTTTCCCTCTGATTCCAGGAGATACAGATTACCGAATATTTGCTGAGGACTATGGGGACATCCCAGGATTGGATATTATATTCATCATTGGAGGCTATTTCTATCACACTGGATATGACAGGCTGGATAAAATTTTGCCTGGAAGTATACAGGCTCGAGGGGAGAACTTAATCAGCTTATTGAAAGCACTTTCAAGTTCCTTCCAGTTAAGAAATGCTCAGCAAAGAGCTGATATCATAACTGCAGCAAATAGCATCCAAGAGGATCGGCCAGTTTTCTTTGACTATCTTTCATTGTTTATGGTTACTTATTCAAAGAAAACAGCCAGGATATTATATGTTTTGCCTATGATCTTTGTTCTTGTTGCTCCTGTATTTTCCATGTCTTCCAATTTCGGGTTTCTCTCCTGGTTCACAGGTCTTTGGTGTATCTTTAAAGGTATGGTGTTGCATGCAGCGGGGCTCATTTTAGCAGTAATTGTACCTGCAGTGTTTGCTTTCTTGAGATTGCTGGTGTCAAATTCAGCTATGAACTGGTATGCTCATCCTTGGTTGGCACTGGTTATGTTTGTTCCAAGTGCTCTTGTTGGCTTATTATTGCCAAAGGCAATTTGGAGAGGCTCACTAGCTAATAATCTGACTACCATTGATAAAGCTTCTAAAGAGGACTGGGCAAGTCATTGGGGATCAGTTGCCTTTTATGCTACAGTATCTTTAGTTTACTTGTATACTGAATTTGGTGTATGCACTTTGACATTTTGGTGGGCAGTATTCCTGATTTTAACGTGGCCAGTTTTCACAATCTCTGTCAAATTCTTTGGTCGACATTTGCTTAGGTCACTCCTGGGTTACATTATTCCACTTATTTTGCCTATTGCATTTTCTCTCTACGTTGGTGGAATTTGTATCCAATTTCTTATTGAAAAGATGGGAATGTTTGGTGCTGTCCCAGAACCCTATGGATATTTTGTTTCGGATATTATTGTTGGCTCTGTGACTGGAATTATTGTTGGTTTGTGTGTTGGTCCTCTGATCCCCATTCTGGGGAGTTGGTTGTCAAATCCTGTACCATTACAGTTGCTTGTACAACTGAGTGTTGTGGCAATGGCATTATCTTCTCAGTTTTTCCCATATAGTGTTGATGCTCCAAAGAGGCTTGTTCTTCAACACACGTTCCAAACTACAGGGAATAAATTATCACATTCTTCATACGATATGGGAATTGCAGATGCCAATACATTGTCTTTTGTATTGAAAAATGCACCTGAAGCAGCAAAGCAGTTGAATATAGACCCAATGTTTTACAAGGAAACAGCAAATTATTCTGATGAAGGAACATTTATGGGATTATATCCAGTTTCTCGTTTATTTTCCCAGAAATTGACGTTTCCTGGAGCAACAGAGGACATTTTTGAACACTATCATAATTTACCCAGGTTATTCATGGATGAGGAAACAACTTCTAGTTCTCAGATCCGGAGGGTACACTTAGAGCTTGACGTCGGTTCTCTTCAAGAGGTTTGGGTTGCAGTTCTTAATATCACAGGGCCTCTTGCTAGTTGGTCCTTTTCTGAGAAGGAATTGCCAGTTCCTGAACAGGTAAATGGTGGGCCGCTGTCTTATATATTACGATTAAGTGGCAGCAGTTCTGAGAATTGGAAGTTTTGGGTCGAGGCAAGCAGTTCTGAAGCTTTGAAGATTGACGTTGCTGTCTTGGATCAACGTCTAGATAAGCGGGCAATAAAATTGAAACAGTGCTTTCCACCTTGGGTTGATGTTATTGCATATTCAAGTTTTTTGTCAAGCTATGTATTCTAA___ATTAAAATATCAAGAAGAGAAGTAATTATATTTTACTTATTATTTTGTTTCTGAATGTATCCGTTTTATTTCAATGCAAACGAAGGTTTCAATTATATTTTAGTCAATCGTGGTGATGATCAGTAATGTAATTCACAAGCAATTCAAATATGTTTGAAGTCATGCCAAACATATATTCTTAAACAACATTCAGTACCAATCATATTAATCAATTGTGGCCCATATTGTGGGTTCACAGCTTTGTTTGAACTAGTTTAATTTGAAAGCAGCTCGAACCACAGATTTGTTGCTATATTTATTAGCATAGCTTACTATGGGATCTAATTAAAGAATTGCATCAACTCTAGTCCATCTATCCTTCATCAAAGCATGTGCAGAATGGAAT

Fln Alignment:

Contig28572___KCLLIVGVIYGVLGSVAYGIIYKKHVTPLPPDASPDRFSEGRAMDHLWHLAERIGIRQEGSHGLLEAAHYIKGQLEEFSGRANSNVSIEVDEALVSGSFNMIFLRHSISLAYRNHTNILVRISSTYAKDDDPAVLINGHFDSPLGSPGAGDCGSCVASMLEVLRLIIDSGWVPPHPIVFLFNGAEELFLLASHGFMKTHKWRETIGAFINVEASGTGGVDLVCQSGPGSWPSLVYTKSAVYPMAHSAAQDIFPLIPGDTDYRIFAEDYGDIPGLDIIFIIGGYFYHTGYDRLDKILPGSIQARGENLISLLKALSSSFQLRNAQQRADIITAANSIQEDRPVFFDYLSLFMVTYSKKTARILYVLPMIFVLVAPVFSMSSNFGFLSWFTGLWCIFKGMVLHAAGLILAVIVPAVFAFLRLLVSNSAMNWYAHPWLALVMFVPSALVGLLLPKAIWRGSLANNLTTIDKASKE---DWASHWGSVAFYATVSLVYLYTEFGVCTLTFWWAVFLILTWPVFTISVKFFGRHLLRSXXXXXXXXXXXXAFSLYVGGICIQFLIEKMGMFGAVPEPYGYFXXXXXXXXXXXXXXXLCVGPLIPILGSWXXXXXXXXXXXXXXXXXXXXXXQFFPYSVDAPKRLVLQHTFQTT-GNKLSHSSYDMGIADANTLSFVLKNAPEAAKQLNIDPMFYKETANYSDEGTFMGLYPVSRLFSQKLTFPGATEDIFEHYHNLPRL-FMDEETTSSSQIRRVHLELDVGSLQEVWVAVLNITGPLASWSFSEKELPVPEQVNGGPLSYILRLSGSSSENWKFWVEASSSEALKIDVAVLDQRLDKRAIKLKQCFPPWVDVIAYSSFLSSYVF
D7TAV9_______________KVLFSMAIMYGLMAVLVYSIVHMHFITPLGIDAPLDRFSEGRALQHLRVLSQEIGSRQEGSPGLKEAARYIKAQLEVLKERAGSNIRIEIEETIVDGSFNMIFLGYSISLGYRNHTNVIMRISSVNSQETDPSVLLNGHFDSPLGSPGAGDCGSCVASMLEMARLTVDSGWVPPRPIIFLFNGAEELFLLGAHGFMKTHKWSDTIGAFINIEASGTGGLDLVCQSGPGSWPSLVYAQSAVYPMAHSAAQDVFPVIPGDTDYRIFAEDYGDIPGLDIIFLLGGYFYHTSYDTMERLLPGSIQARGENLLSITRAFANSSKLLNAHERESLKVAANEPKDERAVFFDYLSWFMIFYSRRAAVVLHTIPIAIFLLMPFLLFVLNIGKRTWFSTFYDFFKGLLLHTIGVVLAVVVPIVFAILRLLFSNHAMSWFARPYLAFMMFIPCSLVGVLIPRVVWRSVPLTHGVSRLQASKEGLSDDPRFWGVFGFYALLTLAYLVAGLSGGFLTFSLSVSMLAAWISFHFAVKLFDCQSLRSAMCYVLPLIPCITYSVYFGGFLAQFLIEKMGMMGSIPPPYGYFIPDIIVAAVIGLVTSWCVGPLIPICGHWLARSSILKFLLQLSVLALALSSQFFPYSIAAPKRVVFQHTFLTADASRVVGSSYDFSVVDSNSLPFLFEHAPEVAKELNMGSELSFKATKDSPRQTWMVLFPVSFLFSGSLKFPARSDDMLKHYSSFPHLSAYKPHTLYDGGSRRVHLEFYLGSLEEVWVSVLNITGPLSSWSFADNVLPAPESRGGGPLSYICRLSGASHENWTFWLEASSSEEIRVEVAVLDQYMVDAAKKLKGLFPSWVDVTAYSSFLSSYVF

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
292	33		66		0.997452
356	33		33		0.997753
416			33	66	0.997452
453		80		20	0.995493
454	80		20		0.995493
462			20	80	0.995493
469	20		80		0.995493
479	20		80		0.995493
502	25			75	0.996473
505		75	25		0.996473
550		20	80		0.995493
565	83		16		0.994512
567	66			33	1.0
620		81	18		0.999994
624			90	10	0.90298
641		11	88		0.923564
651		77	22		0.999999
663	88			11	0.923564
687		11		88	0.923564
699		77		22	0.999999
1696	66		33		0.997452
2038	14		85		0.993533
2039	14			85	0.993533
2408	10		90		0.90298
2421	12		87		0.992554
2430		90		10	0.90298
2433	90		10		0.90298
2445		90	10		0.90298
2526	10		90		0.90298
2727	88		11		0.923564
2764	85	14			0.993533
2774	20		80		0.995493
2775	80	20			0.995493
2777			80	20	0.995493
2778	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain