SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28504

Length: 1121 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28504

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GBP_C multi-domain protein	-	-	9.0e-06	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	Gene names
Sma3	GSVIVT00003048001; GSVIVT00018645001; OJ1125_C04.27; OsI_03219; OsI_03220; OsI_21979; OsJ_02964; OsJ_02965; OsJ_19544; P0007F06.9; POPTRDRAFT_216338; POPTRDRAFT_594629; RCOM_1172170; VITISV_003176; VITISV_022809; VITISV_044061;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	DDT domain	IPR004022	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Protein of unknown function DUF679	IPR007770	-	-
Sma3		IPR012287	-	-
Sma3		IPR015706	-	-
Sma3	DDT domain, subgroup	IPR018500	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF4

Fln msg: STOP codon was not found. Distance to subject end: 253 aas,

Fln protein: KKEKEKQPKKEKAKPAPCASTSTSTSTSTCACHSVSLMPTATKTNFYDDYDARKRPPLKLNCEGGGGWKKKSQPQNLQLHPTELLRAIAAVEAQLGEPLREDGPILGVEFDQLPPGAFGSPIVALTGQLKQGGHHYEKLFDRQDTKSNKRFSVLQNDEHTSLPAASSGKRKAAVGSMPTIHPQPGTRAPQEYQFLPEQPSGRRDPYDRLPPSSFYESPFEVLGPSAPPLSTAGNFLHGHDHLTAGYSFQNQVSNPGLLSQEGRSGHAFSQGGIDYEGLQHKDCFTGFSLDGQFGSHQALGAENAYLQSDKRALYQDQNETQIEKKRKSEDARIAKEVEAHAKRFRKELERQEIMKRKMEEQMRKEREKQDREK

Protein Length: 374

Fln nts: AAAAAGGAGAAGGAGAAACAGCCCAAGAAAGAGAAAGCCAAACCTGCGCCCTGCGCTTCCACCTCCACCTCCACCTCCACCTCCACCTGCGCCTGTCATTCTGTCTCCCTCATGCCAACTGCCACGAAAACTAATTTCTACGATGACTACGATGCCCGGAAACGGCCGCCCTTGAAACTAAACTGTGAGGGAGGTGGAGGATGGAAAAAGAAGTCGCAACCGCAGAACCTACAGCTGCATCCCACAGAACTCCTCCGGGCTATTGCTGCCGTGGAAGCTCAGCTGGGGGAGCCATTACGCGAAGACGGCCCTATTCTTGGCGTTGAATTTGATCAACTACCCCCTGGTGCTTTTGGGTCACCTATAGTGGCTTTGACTGGGCAACTCAAGCAAGGAGGGCACCATTATGAGAAACTGTTTGATCGACAAGACACAAAATCCAACAAAAGATTTTCTGTTTTGCAGAATGATGAGCATACATCATTGCCAGCGGCCTCCAGTGGAAAGAGGAAGGCAGCAGTTGGTAGTATGCCTACCATTCACCCTCAGCCTGGTACTAGAGCTCCTCAAGAATATCAATTCCTGCCAGAGCAACCAAGTGGAAGACGTGATCCTTATGACAGGTTGCCACCATCGAGCTTTTATGAAAGTCCTTTTGAGGTTCTTGGGCCAAGTGCACCCCCATTATCTACTGCAGGGAATTTCCTGCATGGACATGATCACCTGACTGCAGGGTATAGCTTTCAAAATCAAGTTTCAAATCCTGGTCTGTTGTCTCAAGAAGGCAGGTCTGGTCATGCATTTTCTCAGGGTGGCATTGATTATGAGGGTTTGCAACACAAAGATTGTTTTACTGGATTTTCACTTGATGGTCAGTTTGGATCTCATCAAGCTTTAGGGGCAGAAAATGCGTACTTGCAATCTGATAAACGTGCCTTATATCAGGACCAAAACGAAACCCAGATTGAGAAGAAACGAAAGAGTGAGGATGCAAGGATAGCGAAGGAAGTGGAAGCTCATGCAAAACGGTTTAGAAAGGAGCTAGAAAGACAGGAAATTATGAAGCGGAAGATGGAGGAGCAAATGCGGAAAGAGAGGGAGAAACAAGACCGTGAAAAACG

Fln Alignment:

Contig28504___DYDARKRPPLKLNCEGGGGWKKKSQPQNLQLHPTELL-------RAIAAVEAQLGEPLREDGPILGVEFDQLPPGAFG
D5ABF4_______________EMEARRLPSKSLNSFEIEARSKRREKEGLHMVVEPLYWQQAVEHQAISAVKVQLGRLFQEDGPMLGVEFDPLPPDAFG

SNPs (tot: 4)

Position	A %	G %	T %	Probability
330		16	83	0.994512
331		16	83	0.994512
502		16	83	0.994512
1082	33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
58	88	TCCACC TCCACC TCCACC TCCACC TCCACC T	31

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain