SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28495

Length: 485 nt

UniGene Fasta

>sp_v3.0_unigene28495
ACCTCCTCCTTATGTAAACGATCTTTATCTTTCTCGCACTCTCAAAGAAACCTCTCTCTATCTAATTTCATTGAAGGAACGAACAATCTCCTCAGAATGGCCGCTGCAGCAATCAATGGCAATGACTGTAAACCAACCATTGTCTGCGTGACGGGAGCGACAGGTTTCCTAGCCTCCTGGTTGGTCAAGCGACTTCTAGAGAAGGGATACACTGTCCACGCTACAGTTCGCGACCCGGAAAACAACGCAAAGGTACGACATCTCCTCGACATTCCAGAAGGTGGGGAGAAGCTCAAGCTGTTCAGAGCGGATCTATTGGAAGAAGGCAGTTTCGACGCTGCCATCCATGGCTGTGATGGTGTTTTTCATGTGGCAAGTCCTGTCGACTTTGCCCCTAAAGATCCTGAGAATGATGTTATCAAGCCGGCAGTCGACGGAACGCTTAATGTTCTGAGGGCTTGCACGAAAGCCAAGACCGTAAAGCG

Ace file of the UniGene sp_v3.0_unigene28495

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	1.4013e-45	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Dihydroflavonol 4-reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	7.87095e-41	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	7.87095e-41	%
Sma3	Biosynthesis of phenylpropanoids	01061	7.87095e-41	%
Sma3	Metabolic pathways	01100	7.87095e-41	%
Sma3	Biosynthesis of secondary metabolites	01110	7.87095e-41	%

Source	Gene names
Sma3	A; A1; A1 (Teosinte); A1* (second gene); A1* (second gene)/ (Teosinte); A1-a; A1-b; AN6; ANR; ANT18; AeloDFR-S1; AeseDFR-S1; AeshDFR-S1; AespDFR-S3; AespDFR-S4; AespDFR-S5; AesqDFR-D1; At1g09490; At1g09500; At5g42800; CAD1; CCRL1; CtDFR; DFR; DFR-A; DFR-B

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42800.1	DFR, TT3, M318 dihydroflavonol 4-reductase chr5:17164296-17165864 REVERSE LENGTH=382	66%
RefSeq	Arabidopsis thaliana	NP_199094.1	dihydroflavonol-4-reductase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002307667.1	dihydroflavonol 4-reductase, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADN9

Fln msg: Distance to subject end: 213 aas, your sequence is shorter than subject: 129 - 343

Fln protein: MAAAAINGNDCKPTIVCVTGATGFLASWLVKRLLEKGYTVHATVRDPENNAKVRHLLDIPEGGEKLKLFRADLLEEGSFDAAIHGCDGVFHVASPVDFAPKDPENDVIKPAVDGTLNVLRACTKAKTVK

Protein Length: 130

Fln nts: ACCTCCTCCTTATGTAAACGATCTTTATCTTTCTCGCACTCTCAAAGAAACCTCTCTCTATCTAATTTCATTGAAGGAACGAACAATCTCCTCAGA_-_ATGGCCGCTGCAGCAATCAATGGCAATGACTGTAAACCAACCATTGTCTGCGTGACGGGAGCGACAGGTTTCCTAGCCTCCTGGTTGGTCAAGCGACTTCTAGAGAAGGGATACACTGTCCACGCTACAGTTCGCGACCCGGAAAACAACGCAAAGGTACGACATCTCCTCGACATTCCAGAAGGTGGGGAGAAGCTCAAGCTGTTCAGAGCGGATCTATTGGAAGAAGGCAGTTTCGACGCTGCCATCCATGGCTGTGATGGTGTTTTTCATGTGGCAAGTCCTGTCGACTTTGCCCCTAAAGATCCTGAGAATGATGTTATCAAGCCGGCAGTCGACGGAACGCTTAATGTTCTGAGGGCTTGCACGAAAGCCAAGACCGTAAAGCG

Fln Alignment:

Contig28495___MAAAAINGNDCKPTIVCVTGATGFLASWLVKRLLEKGYTVHATVRDPENNAKVRHLLDIPEGGEKLKLFRADLLEEGSFDAAIHGCDGVFHVASPVDFAPKDPENDVIKPAVDGTLNVLRACTKAKTVK
D5ADN9_______________MAAATINGKDCYATTVCVTGATGFVASWLVKRLLEKGYTVHATVRDPENKMKVRHLLDIPKAGEKLKLFRADLIEEGSFDAAINGCDGVFHVASPVDFTPKDPENDVIKPAVDGTLNVLRACTKAKTVK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
165			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain