SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28305

Length: 838 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28305

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to E3 ubiquitin-protein ligase UPL1 n=1 Tax=Vitis vinifera RepID=UPI00019857DB	-	-	0.0	51%
FL-Next	sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%

Source	Gene names
Sma3	At1g55860; At1g70320; F14J16.14; F14J16.37; F17O7.14; F17O7.15; GSVIVT00033389001; OsI_30556; OsJ_28543; P0574F11.30; PHYPADRAFT_137606; POPTRDRAFT_1093798; POPTRDRAFT_815774; RCOM_0522490; UPL1; UPL2;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	acid-amino acid ligase activity	GO:0016881	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55860.1	UPL1 ubiquitin-protein ligase 1 chr1:20879900-20895393 REVERSE LENGTH=3930	47%
RefSeq	Arabidopsis thaliana	NP_001185245.1	ubiquitin-protein ligase 1 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002298873.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GY23

Fln msg: Distance to subject end: 1572 aas, your sequence is shorter than subject: 279 - 3681

Fln protein: RDSESSQGRGPCQGAEFSGHGGLLYHVLHRLLPYPVDKKSESNSEEWREKLSEKASWFLVVVCGRSSEGRRRVISEIVRALHMASNSVKDSSKHAQLPNKKVVAFVDLVNSILSNNASSGNPQVPGCSPDMAKTMIDAGMVQALTTTLQVIDLDHPEAPKLVNLVLKALEALTRAASAGEQVSKSEDNDKKKSLAAEERNHNVSNLVSSGEEAQAEQHEVNQSGDWQGAGLGRTQVQIAEGTSDPARDQVGNLNEHMEHDMRIERDENAEAANGAEREE

Protein Length: 280

Fln nts: CGGGATTCAGAGAGTAGTCAAGGTCGTGGGCCTTGCCAAGGAGCTGAGTTCTCAGGACATGGTGGCCTTTTATATCATGTATTGCATAGGCTTTTGCCCTATCCCGTGGACAAAAAATCTGAAAGCAATAGCGAAGAGTGGAGAGAGAAGCTATCAGAGAAAGCTTCTTGGTTTCTGGTTGTAGTATGTGGTCGTTCTAGTGAAGGCAGAAGAAGAGTAATCTCTGAAATTGTGAGAGCCCTCCATATGGCCTCAAATTCTGTGAAGGATTCTTCAAAGCATGCCCAATTGCCTAATAAGAAAGTAGTGGCTTTTGTGGATTTGGTAAATTCGATTCTATCAAACAATGCATCATCAGGTAATCCACAGGTGCCAGGTTGTTCTCCTGATATGGCAAAAACAATGATTGATGCAGGGATGGTTCAAGCTCTGACTACCACCCTCCAGGTCATTGACTTGGATCACCCAGAAGCTCCAAAGCTTGTAAATCTTGTGCTCAAGGCTTTGGAGGCTTTAACAAGAGCTGCTAGTGCAGGTGAACAAGTTTCTAAGTCTGAAGACAATGATAAAAAGAAGTCTTTGGCAGCAGAGGAAAGAAATCATAATGTCTCCAACTTGGTCTCTAGTGGAGAGGAAGCTCAAGCTGAGCAGCATGAAGTTAATCAGAGTGGGGATTGGCAAGGAGCAGGCTTGGGCCGAACACAAGTACAGATTGCAGAAGGCACTTCAGATCCAGCAAGAGATCAAGTAGGGAATTTGAATGAGCATATGGAACATGATATGAGGATAGAAAGGGATGAAAATGCAGAAGCTGCTAATGGAGCAGAACGTGAAGAAC

Fln Alignment:

Contig28305___RDSESSQGRGPCQGAEFSGHGGLLYHVLHRLLPYPVDKKSESNSEEWREKLSEKASWFLVVVCGRSSEGRRRVISEIVRALHMASNSVKDSSKHAQLPNKKVVAFVDLVNSILSNNASSGNPQVP--GCSPDMAKTMIDAGMVQALTTTLQVIDLDHPEAPKLVNLVLKALEALTRAASAGEQVSKSEDNDKKKSLAAEERNHNVSNLVSSGEEAQAEQHEVNQSGD-----WQGAGLGRTQVQIAEGTSDPARDQVGNLNEHMEHDMRI
Q8GY23_______________RDTEISQLRGSNLPDDSPGNGGLIYHVIHRLLPISLEKFV--GPEEWKEKLSEKASWFLVVLCSRSNEGRKRIINELSRVLSVFASLGRSSSKSVLLPDKRVLAFANLVYSILTKNSSSSSSNFPGCGCSPDVAKSMMDGGTIQCLTSILHVIDLDHPDAPKLVTLILKSLETLTRAANAAEQL-KSEVPNEKKNRDSDERHD------SHGNSTETEADELNQNNSSLQQVTDAAGNGQEQAQV---SSQSAGERGSSQTQAMPQDMRI

SNPs (tot: 5)

Position	A %	C %	G %	Probability
576	87		12	0.992554
626	57		42	1.0
667	14		85	0.993533
686	14		85	0.993533
712		14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain