SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28244

Length: 1697 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28244 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Magnesium transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HN14_POPTR	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Magnesium transporter	-	-	1.369e-39	-

Source	Gene names
Sma3	AT1G16010; At1g16010; At1g16010/T24D18.11; At1g80900; At3g19640; At5g64560; B1417F08.35; F17I14_120; F23A5.26; GSVIVT00001499001; GSVIVT00019261001; GSVIVT00020125001; GSVIVT00023859001; GSVIVT00023860001; GSVIVT00030033001; GSVIVT00037617001; GSVIVT00037

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19640.1	MGT4, MRS2-3 magnesium transporter 4 chr3:6820969-6823104 FORWARD LENGTH=484	54%
RefSeq	Arabidopsis thaliana	NP_188598.2	magnesium transporter MRS2-3 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002313918.1	magnesium transporter, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP2

Fln msg: your sequence is shorter than subject: 476 - 494

Fln protein: GGLRSWLVIEATGNAELLEVGKHVIMRRAGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITSDEVLLLNSKDPVVAPFADDLQRRLPVGCCMPPQRESGTSDADMETTNNANLKTHPFPRESELTNVNGRGLPETLVFPRSNLPTISDKKGEVLKSELTCSVNGNGPKILPFEFRALEACLEAACSCLETETITLEKEAYPALDELTTKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTEKLIQQQLDEASSLHSFDGTREVEHEKVESDAEDESDEALPSAMHLLARDDNRNCSNIQTASQCSNHSGSKNFDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNQLLQMGVMLSTATLLLNCAIVVVGLFGMNIQIGLFDEGIGGTPQFLEIILGSIAACVVLYIIAIVWGKRSDYLNEVLLWNSSTMRNAFYCYWLW*

Protein Length: 477

Fln nts: CGGGGGATTGAGGTCATGGCTGGTGATAGAGGCCACAGGGAATGCCGAGCTGCTCGAGGTCGGCAAACATGTAATCATGCGACGCGCAGGACTTCCTGCTCGTGATTTACGCATTCTTGATCCCTTGCTTTCCTATCCTTCTACAATTCTCGGGCGGGAGCGCGCCATTGTCATAAATCTAGAGCATATAAAGGCCATTATTACTTCAGACGAAGTTTTGTTGCTCAATTCAAAGGATCCTGTCGTCGCTCCCTTCGCAGATGACCTTCAGCGCCGGTTGCCTGTCGGCTGTTGCATGCCGCCGCAACGGGAAAGTGGAACAAGTGATGCTGATATGGAAACAACCAACAATGCTAATCTAAAAACACATCCATTTCCCAGAGAATCAGAATTAACAAATGTGAATGGTAGAGGCCTTCCGGAGACCCTTGTATTTCCAAGAAGTAACCTCCCGACGATTTCTGATAAAAAAGGGGAAGTTCTGAAGTCAGAATTGACTTGCTCTGTAAATGGAAATGGTCCAAAGATTTTACCATTTGAGTTTAGAGCATTGGAAGCTTGCCTTGAAGCGGCATGCAGCTGCCTGGAGACAGAGACAATTACGCTGGAGAAAGAGGCGTATCCAGCCTTGGATGAGTTGACGACAAAGATTAGCACACTTAATCTTGAAAGAGTCAGGCAAATAAAGAGCCGATTGGTTGCAATATCAGGACGTGTCCAAAAGGTAAGGGATGAACTAGAGCACTTGCTTGATGATGATGAAGATATGGCCGAGATGTATTTAACAGAGAAGCTAATTCAGCAACAGCTAGATGAAGCTTCTTCTCTTCATTCCTTTGACGGGACAAGAGAAGTAGAGCATGAGAAAGTTGAGTCTGATGCAGAAGATGAAAGTGATGAAGCCCTTCCCAGTGCCATGCATCTTCTTGCTAGAGATGATAACAGGAACTGCAGCAATATCCAAACTGCCAGCCAATGTAGCAACCACAGTGGTTCTAAGAATTTTGATGTAGAAGAACTGGAGATGCTTCTAGAGGCTTACTTTGTGCAGATTGACGGTACACTGAACAAGCTGTCAACTTTAAGGGAGTATGTTGATGATACAGAGGATTACATCAACATCATGCTAGATGACAAACAAAATCAGCTTTTGCAGATGGGTGTAATGCTGAGTACAGCAACCCTTTTGCTCAACTGTGCCATTGTTGTAGTTGGACTTTTTGGCATGAATATTCAAATTGGCTTGTTTGATGAAGGAATTGGTGGCACGCCTCAGTTTTTGGAGATTATTCTTGGTAGTATAGCCGCATGTGTAGTTCTCTATATTATTGCCATTGTCTGGGGTAAAAGAAGCGATTACTTGAATGAGGTGTTACTCTGGAACAGTTCGACAATGCGAAACGCATTTTATTGTTATTGGTTGTGGTAG___AACGAGGCGATTACTTGAATGAGGTGTTACTCTGCAACAGGTTCAAAGAGACATATTTTATTAGCTAATGAGTCACAACATGACATGACTATTTTCTATTCTTGATATGTCTTCCTTATTGACTTCCAGCAATGCCATGATAATTTTAAACATATGATCGATTTCAATCTCCTACAACAACAGGAGTCATTGTAAATATTTCAGCTTTGATCTTTTAAGTATAAATTGTGAGGGAAATGGATAAAAGGATTCCTCCTTTGGACACTGT

Fln Alignment:

Contig28244___GLRSWLVIEATGNAELLEVGKHVIMRRAGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITSDEVLLLNSKDPVVAPFADDLQRRLPVGCCMPPQRESGTSDADMETTNNANLKTHPFPRESELTN-VNGRGLPETLVFPRSNLPTISDKKGEVLKSELTCSVNGNGPKILPFEFRXXXXXXXXXXXXXETETITLEKEAYPALDELTTKISTLNLERVRQIKSRLVAISGRVQKVRXXXXXXXXXXXDMAEMYLTEKLIQQQLDEASSLHSFDGTR---EVEHEKVXXXXXXXXXXXXXXAMHLLARDDNR----------NCSNIQTASQCSNHSGSKNFDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNQLLQMGVMLSTATLLLNCAIVVVGLFGMNIQIGLFDEGIGGTPQFLEIILGSIAACVVLYIIAIVWGK
B8LQP2_______________GVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFIADLQRRLNV----PTQQEGRNSDTDADVANKDILRTSPSGMMPTLSSSMNNGELQQLKKFRENVFLEKPDTWGDGSKPDM--NAYENGPKVLPFEFRALEACLEAACSCLESETTILEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTDKLRQHYLDGNASPSSFYGGRDGMEYEPTQSDAEEERSLLERHTDPQNLLSSSGNHVEGPLAATKAPSRNEYSSSSSGSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGIFGMNITIDLFDEDRAGLPEFLWTVGGCATGSIFLYIVAIAWCK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
627	75	25			0.996473
1245		20	80		0.995493
1252	20		80		0.995493
1280		80		20	0.995493
1338		20		80	0.995493
1410		66		33	1.0
1461			83	16	0.994512
1462			83	16	0.994512
1526	16			83	0.994512
1542		33		66	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
936	947	TCA TCA TCA TCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain