SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28197

Length: 2033 nt

UniGene Fasta

>sp_v3.0_unigene28197
TTGAAGAGTCGCACAAGAAGTAGCAGGAGTAACAGGCAGACAATTTGAAGCAGAGTGTGGACGAACTACAGTACAGACAAAGATGGTGTCCTTTGAATTTGCGTTCAACAATCCTATCTTCTCCGACCGCCAGCTCGTCTTGGAAACGTTGCCTTCTCCTGGATCGTCCCCCGTTACAGAATCAGAATGTGTTGTTGATGCTAGTAAAATGGAAATGTTACATGTGAGCTCAATTTTACTTGCTGCTCATTCAGATTATTTCATGAGACTCTTTTCAAATGGAATGAGTGAGTCGCACTCACATGTTGTGACAATCAAGCTCACTGAAGAAGAGTTACAGTGTTTCTACCACCTTGTCCAATATATGTACACAGGATATCTAAAAGATCCACCAGATGCAGAGAGCACAATCATCCTCTTGCGTCTCGCCGATCGTTTTGCCATCACATCATGCATAAAGGATCTTGCTGACGCTCTTCAGAAGTTACCCAATACAGTAAGTGGCTGTCTTCAAGTTCTAGGGCTCCCCGAATCCTTGAAAGCATCCAAGACAGTACAGCCAGTAGTGGAGCATTTCAGCAACTGCTTAACTCAGTATTTTGCCGACATCTCAAGTAGAAAATCTGAATTCTTATCATTAAGTCTCGAAGCAGTTAAAGTCGTTCTGGGTAGTGACACTCTAAATATATCTTATGAGGAAGACGTGTTCTACTACTTGCTTGATTGGTTGAATGCTAACTGCCAAAGCGAAGAAGAAAAGAAACTAGCTGCTCTAGAAATCACAGTCGTAGTGCGCTTTCCTTGGATGACTGGTGACTTTTTGATGGATGTGGTTGGTAGCAATCCTTGCATGGAGAGTTCTGCTTGTCAAGAACTTATTCTGGAAGCAATGAAATTCAAAAGTTTCACACATGCTAGGCAGCAGCAAATGATGTTTGAAAAGACACACCATAACCGATTCCGCCCTCGGAACACTTTAATTCTGGAGAATTTCTGGGGAAACTCAAAAACTTATACCATGCACTCGTCTGAAACAAGTTGTCAAGTTTACTTTGAATTTCCACTGGAGTTAGTAATATGCACAGGTCAGAACTTCCATTCACGAACATTTTCTCTTGGGAATAAATTTACATTCTACTTGGAAGCTCAGCATGGACAAGTGAAGACATCTTACAACCAGCAACTTACTTGTTGCATCAGTCTTGTTCTCTCACCAATCTCAATGCCAAATTCAAATGATGCAAAGTCTCGGAATACGATTCTTGAATATGCTATTTCAATGAAAAGAGATTATTCCCAGAGTTATGATACAAAGGCCACAGGATTGCTAGACATGCAGTCCACTGAAATAGGCAAGAGATGTATCACTTTTAATGATATGTTTTCAGGATGGTTTATTGAAAGAGGGTTCAGCTTTCCAAGATGGAATCTGACAATCAATGGGCCGGTATTTCTTCGTCTCGATCTCAGTCTGAAGGATAGAGAAAACTAACCTCAGTTATGTGGAAAACTGAAAGGAGGAGTTTCTCGAGGAGGAATGGATGGGGAAAAACTTACTATGTTGTATTTCTATCACGTGTACTTATACACATAATTCCCTCTCTCAGAGGGGGTTGCCAATAGCCCCAATTCAGAATCTAACAGTCAATATATGTCATAGAAATCTGAACTTCCCAGATAGAATTTAAAAGGAAAAAAGGTATTTCTGTACGGTTGCTGTTTCTGAGGTTTAGCTTTATAGAACCAATTTATGTTGCAACCTGATGTTGCCCAATTATATGTTCCCATTGTGGAACTAGAGTGATGGGAAGTTGTGCATACTACCAGTGATCTAGTTATGTCCAATCTTTGAATTTGGATGGCAACCTTTTAGGTCGTTAAGCTGCAAGGAATTCACCGAGTGATTGGATTCAGTTGTCCATCTTACGCTACATTTATAACGTGCGTCAAGGCACAACCTTTAGCATATTAGCATATTCCAAGCATGAATTGTTTTTAGGTTATGTTTACTAATTGAGTTTTAAATTTTAATC

Ace file of the UniGene sp_v3.0_unigene28197

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	POZ/BTB containin G-protein 1 [Arabidopsis thaliana] gb\|AAG44951.1\|AF292397_1 POZ/BTB containing-protein AtPOB1 [Arabidopsis thaliana] gb\|ABO38760.1\| At3g61600 [Arabidopsis thaliana] gb\|AEE80230.1\| POZ/BTB containin G-protein 1 [Arabidopsis thaliana]	-	-	2.0e-29	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%

Source	Gene names
Sma3	PHYPADRAFT_171041;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/Kelch-associated	IPR011705	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LML1

Fln msg: your sequence is longer than subject: 470 - 430

Fln protein: MVSFEFAFNNPIFSDRQLVLETLPSPGSSPVTESECVVDASKMEMLHVSSILLAAHSDYFMRLFSNGMSESHSHVVTIKLTEEELQCFYHLVQYMYTGYLKDPPDAESTIILLRLADRFAITSCIKDLADALQKLPNTVSGCLQVLGLPESLKASKTVQPVVEHFSNCLTQYFADISSRKSEFLSLSLEAVKVVLGSDTLNISYEEDVFYYLLDWLNANCQSEEEKKLAALEITVVVRFPWMTGDFLMDVVGSNPCMESSACQELILEAMKFKSFTHARQQQMMFEKTHHNRFRPRNTLILENFWGNSKTYTMHSSETSCQVYFEFPLELVICTGQNFHSRTFSLGNKFTFYLEAQHGQVKTSYNQQLTCCISLVLSPISMPNSNDAKSRNTILEYAISMKRDYSQSYDTKATGLLDMQSTEIGKRCITFNDMFSGWFIERGFSFPRWNLTINGPVFLRLDLSLKDREN*

Protein Length: 471

Fln nts: TTGAAGAGTCGCACAAGAAGTAGCAGGAGTAACAGGCAGACAATTTGAAGCAGAGTGTGGACGAACTACAGTACAGACAAAG_-_ATGGTGTCCTTTGAATTTGCGTTCAACAATCCTATCTTCTCCGACCGCCAGCTCGTCTTGGAAACGTTGCCTTCTCCTGGATCGTCCCCCGTTACAGAATCAGAATGTGTTGTTGATGCTAGTAAAATGGAAATGTTACATGTGAGCTCAATTTTACTTGCTGCTCATTCAGATTATTTCATGAGACTCTTTTCAAATGGAATGAGTGAGTCGCACTCACATGTTGTGACAATCAAGCTCACTGAAGAAGAGTTACAGTGTTTCTACCACCTTGTCCAATATATGTACACAGGATATCTAAAAGATCCACCAGATGCAGAGAGCACAATCATCCTCTTGCGTCTCGCCGATCGTTTTGCCATCACATCATGCATAAAGGATCTTGCTGACGCTCTTCAGAAGTTACCCAATACAGTAAGTGGCTGTCTTCAAGTTCTAGGGCTCCCCGAATCCTTGAAAGCATCCAAGACAGTACAGCCAGTAGTGGAGCATTTCAGCAACTGCTTAACTCAGTATTTTGCCGACATCTCAAGTAGAAAATCTGAATTCTTATCATTAAGTCTCGAAGCAGTTAAAGTCGTTCTGGGTAGTGACACTCTAAATATATCTTATGAGGAAGACGTGTTCTACTACTTGCTTGATTGGTTGAATGCTAACTGCCAAAGCGAAGAAGAAAAGAAACTAGCTGCTCTAGAAATCACAGTCGTAGTGCGCTTTCCTTGGATGACTGGTGACTTTTTGATGGATGTGGTTGGTAGCAATCCTTGCATGGAGAGTTCTGCTTGTCAAGAACTTATTCTGGAAGCAATGAAATTCAAAAGTTTCACACATGCTAGGCAGCAGCAAATGATGTTTGAAAAGACACACCATAACCGATTCCGCCCTCGGAACACTTTAATTCTGGAGAATTTCTGGGGAAACTCAAAAACTTATACCATGCACTCGTCTGAAACAAGTTGTCAAGTTTACTTTGAATTTCCACTGGAGTTAGTAATATGCACAGGTCAGAACTTCCATTCACGAACATTTTCTCTTGGGAATAAATTTACATTCTACTTGGAAGCTCAGCATGGACAAGTGAAGACATCTTACAACCAGCAACTTACTTGTTGCATCAGTCTTGTTCTCTCACCAATCTCAATGCCAAATTCAAATGATGCAAAGTCTCGGAATACGATTCTTGAATATGCTATTTCAATGAAAAGAGATTATTCCCAGAGTTATGATACAAAGGCCACAGGATTGCTAGACATGCAGTCCACTGAAATAGGCAAGAGATGTATCACTTTTAATGATATGTTTTCAGGATGGTTTATTGAAAGAGGGTTCAGCTTTCCAAGATGGAATCTGACAATCAATGGGCCGGTATTTCTTCGTCTCGATCTCAGTCTGAAGGATAGAGAAAACTAA___CCTCAGTTATGTGGAAAACTGAAAGGAGGAGTTTCTCGAGGAGGAATGGATGGGGAAAAACTTACTATGTTGTATTTCTATCACGTGTACTTATACACATAATTCCCTCTCTCAGAGGGGGTTGCCAATAGCCCCAATTCAGAATCTAACAGTCAATATATGTCATAGAAATCTGAACTTCCCAGATAGAATTTAAAAGGAAAAAAGGTATTTCTGTACGGTTGCTGTTTCTGAGGTTTAGCTTTATAGAACCAATTTATGTTGCAACCTGATGTTGCCCAATTATATGTTCCCATTGTGGAACTAGAGTGATGGGAAGTTGTGCATACTACCAGTGATCTAGTTATGTCCAATCTTTGAATTTGGATGGCAACCTTTTAGGTCGTTAAGCTGCAAGGAATTCACCGAGTGATTGGATTCAGTTGTCCATCTTACGCTACATTTATAACGTGCGTCAAGGCACAACCTTTAGCATATTAGCATATTCCAAGCATGAATTGTTTTTAGGTTATGTTTACTAATTGAGTTTTAAATTTTAATC

Fln Alignment:

Contig28197___KMEMLHVSSILLAAHSDYFMRLFSNGMSESHSHVVTIKLTEEELQCFYHLVQYMYTGYLKDPPDAESTIILLRLADRFAITSCIKDLADALQKLPNTVSGCLQVLGLPESLKASKTVQPVVEHFSNCLTQYFADISSRKSEFLSLSLEAVKVVLGSDTLNISYEEDVFYYLLDWLNANC-QSEEEKKLAALEITVVVRFPWMTGDFLMDVVGSNPCMESSACQELILEAMKFKSFTHARQQQMMFEKTHHNRFRPR
B8LML1_______________KVRTIHISSAILAAKSPFFYKLFSNGMRESEQRDVTLRISASEEAALMELLNFMYSATVTTNT-ASALLDVLMAADKFEVASCMRHCSRLLRNLPMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAKQFKDITKFQDDVMALPLAGVEAVLSSDELQVASEDAVYDFVLKWARAHYPKMEERREILGSRLGRLIRFPNMSSRKLKKVLTCND-FDHELASKVVLDALFFKAETPHRQRSLAAEETSHKRFSER

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
67		25		75	1.0
190		85		14	0.993533
295	14		85		0.993533
703		87		12	0.992554
825			16	16	0.988813
834		16	83		0.994512
835	16		83		0.994512
897	40		60		1.0
903	80			20	0.995493
904	80			20	0.995493
1198		50		50	1.0
1426	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain