SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28090

Length: 722 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28090

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoside diphosphate kinase B putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WEZ2_9STRA	-	-	51%
FL-Next	sp=Nucleoside diphosphate kinase; Pinus pinaster (Maritime pine).	-	-	63%
Sma3	Nucleoside diphosphate kinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Purine metabolism	00230	%
Sma3	Pyrimidine metabolism	00240	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT4G11010; At4g09320; At4g11010; At4g23900; At5g63310; Bc-NDPK1; Bc-NDPK3; BcNDK 2; BcNDK I; BcNDK III; CHLREDRAFT_180172; CHLREDRAFT_58944; F25I24.220; F8M12.12; FAP103; GSVIVT00006748001; GSVIVT00010474001; GSVIVT00019061001; LOC_Os10g41410; MDC12.28; M

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial intermembrane space	GO:0005758	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	GTP biosynthetic process	GO:0006183	Biological Process	-
Sma3	UTP biosynthetic process	GO:0006228	Biological Process	-
Sma3	CTP biosynthetic process	GO:0006241	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to UV	GO:0009411	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside diphosphate kinase	IPR001564	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11010.1	NDPK3 nucleoside diphosphate kinase 3 chr4:6732780-6734298 REVERSE LENGTH=238	58%
RefSeq	Arabidopsis thaliana	NP_192839.1	nucleoside diphosphate kinase III [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002299472.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
140	157	CTTGGA CTTGGA CTTGGA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain