SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28070

Length: 1823 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28070 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-glucosidase 41 [Arabidopsis thaliana] sp\|Q9FIU7.2\|BGL41_ARATH RecName: Full=Putative beta-glucosidase 41; Short=AtBGLU41; Flags: Precursor gb\|AED96511.1\| putative beta-glucosidase 41 [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Sma3	Beta-glucosidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prunasin beta-glucosidase.	EC:3.2.1.118	-	9.498e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		9.498e-11	%
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Beta-D-fucosidase.	EC:3.2.1.38	-	5.383e-07	-

Source	Gene names
Sma3	AH1; AT3G18080; AT4g27830; At1g02850; At1g26560; At1g47600; At2g44450; At2g44460; At2g44470; At2g44480; At2g44490; At3g18080; At3g60120; At3g60130; At3g60140; At4g27830; At5g24540; At5g36890; At5g42260; At5g44640; B1168A08.29-1; B1168A08.29-2; B1168A08.31

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-mannosidase activity	GO:0004567	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	beta-D-fucosidase activity	GO:0033907	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	-
Sma3	prunasin beta-glucosidase activity	GO:0050224	Molecular Function	-
Sma3	raucaffricine beta-glucosidase activity	GO:0050247	Molecular Function	-
Sma3	strictosidine beta-glucosidase activity	GO:0050422	Molecular Function	-
Sma3	beta-primeverosidase activity	GO:0050535	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54570.1	BGLU41 beta glucosidase 41 chr5:22167636-22170235 REVERSE LENGTH=535	66%
RefSeq	Arabidopsis thaliana	NP_200268.3	putative beta-glucosidase 41 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002319794.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT85

Fln msg: Separated hits, possible frame ERROR between 1195 and 1197, your sequence is shorter than subject: 476 - 508

Fln protein: VNEGNRTDSIWDTFTHRPGRIMDFSNGDIAVDQYHRFKEDINLMVDMGMDAYRFSISWSRLFLNGSQDINKAGLDHYNALIDTLLAKGIDPYVTLYHWDLPQALEDAYDGWLNPQIIADFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCSILGHLLCKAGNSSTEPYIVAHNLLLSHAAVVDIYRQQFKQKQGGSIGITLDSLWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSNDQSKLLRGSFDFVGINHYTTLYARNDRLQIRKRLLNDAYADSAVITTSFRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRxxDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSFLPKSKSKSTASYLLDHTTQYRSDI*

Protein Length: 477

Fln nts: TGTGAATGAAGGAAACCGGACAGATAGCATCTGGGACACGTTTACGCATAGACCAGGGAGAATCATGGATTTTAGCAATGGAGATATAGCTGTTGATCAGTATCATCGTTTTAAGGAAGACATCAATCTTATGGTTGATATGGGAATGGACGCGTACAGATTCTCAATCTCCTGGTCACGCCTTTTTCTCAATGGCAGTCAAGATATCAACAAGGCTGGTTTGGATCACTACAACGCCTTGATAGATACTCTCCTTGCCAAAGGAATTGATCCATATGTTACTTTATACCATTGGGACCTGCCACAAGCTCTCGAAGATGCTTATGATGGTTGGTTGAATCCACAGATCATTGCTGACTTTGCCAGGTACGCAGAGGCGTGTTTCCAAGCTTTTGGGGACAGAGTGAAACATTGGATTACTTTCAATGAACCCCGTGGAATTTCAATCCATGGTTATGACATTGGTATACAAGCTCCAGGAAGATGTTCCATTCTCGGTCACCTTCTCTGCAAAGCCGGGAATTCTTCCACGGAACCGTATATCGTGGCTCACAACCTGCTTCTGTCACATGCTGCTGTAGTCGATATCTACAGGCAACAATTCAAGCAGAAGCAAGGAGGCTCAATTGGCATCACTCTGGATTCCCTCTGGTTTGAACCTATAACTGACTTGTCCGAAGACCAGGATGCTGCTCAGAGGGCCCTCGATTTCCAGCTTGGATGGTTCATGGATCCCCTTTATTTTGGAGATTATCCAGCATCCATGCGACAGTTGGTAGGTGACAGATTGCCAGTATTTTCCAACGACCAATCCAAATTGCTCAGAGGTTCTTTTGATTTTGTGGGCATCAATCATTACACAACACTATATGCCCGAAATGACAGACTTCAAATTCGCAAGAGACTGCTGAACGACGCATACGCAGACTCTGCCGTCATCACAACCTCTTTCCGGAAAGGAGTTATGATCGGAGAACGGGGTGCCTCACGTTGGCTCTATGTCGTTCCATGGGGAATCCGTAGTTTGATGATATACATAAAACAAAGATACGACAACCCACCAATTATTATCACAGAGAATGGCATTGATGATCCGAATAGTCCTTTAATATCCTTGGACAAAGCACTGCAGGACACCAAGCGAATAGATTACCATAGGGACTACCTTTCAAATCTCTCAGTTGCCATCAGGGAxxxCGATGGATGCGACGTGCGAGGTTACTTTGTGTGGTCACTGCTGGACAATTGGGAATGGAATTCGGGATTCACAGTGAGATTTGGGTTATATTTCGTAGATTACAAGGGCAACCTCACGAGATATCCAAAAGCTTCTGCAGATTGGTTCAAAAGCTTTCTGCCAAAATCAAAATCAAAATCAACCGCCTCTTACCTGCTGGACCACACGACACAATATAGATCCGATATATAATTAGATATATTTATTCATTCTGTAAAATCGCAAATTCAATTATTTTGAAAGCGCGCCAAAGCGATTGGATTGATTCAACTGTATTTACTGATTGTATGTATTGTAAAAATTCAAATTTGTTGGACAAGATACACAGAAATTAGATGTGTGTATTGTAAAAATTGAAATTTATTGGAGGAGATCCAGAGAAATTAGATATAGACGAGCGCTGTCCTCTCACCTAAGCAGATGCTAGAAACAGGAAGCATGTGTTTGTCGTGAGAGAGAGAGGCCTCAATAATTCACTGAATCTTGACGTGTACTGTAATGCAAGCAATGACGATGTACTCAAAGGACTAAAATTTTCGTATTCAAAATTCAAATGACACGACTCTGTGACAGGTGCATTTTGCAGAC

Fln Alignment:

Contig28070___EGNRTDSIWDTFTHRPGRIMDFSNGDIAVDQYHRFKEDINLMVDMGMDAYRFSISWSRLFLNG-SQDINKAGLDHYNALIDTLLAKGIDPYVTLYHWDLPQALEDAYDGWLNPQIIADFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCSILGHLLCKAGNSSTEPYIVAHNLLLSHAAVVDIYRQQFKQKQGGSIGITLDSLWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSNDQSKLLRGSFDFVGINHYTTLYARNDRLQIRKRLLNDAYADSAVITTSFRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRExDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADW
C0PT85_______________EGGRGPSIWDAFSYTPGKIFDGTNGDVAVDQYHRYKEDVDVIAKMGFDVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLIDTLLQKGIRSSVTLYHWDLPQKLHESMGGWLNREIVNYFAQYAETCFTAIGDRVKHWITLNEPLQTAVNGYATGIFAPGRCS--DRSKSPVGDSSTEPYLVAHNQLLAHAVAVDIYRKKFQDKQGGVIGITVDGEGSEPFTDAEGDKEAAQRRLEFQFGWFLDPLYFGDYPAIMRKKVGDRLPQFSPDEVALLLGSVDFVGLNHYTTRYV----IPSFQSSEDEFFVDQDIHRIAEWEGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDTKRVNYFKGYLKSLAKAIRExEGVDVRGYFAWSLIDNFEWSQGYTKRFGLVFVDYKNELKRHPKSSAHW

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
142	25		75		0.996473
346		57	42		1.0
347			85	14	0.993533
727	20		80		0.995493
1301	33			66	0.997452
1302		33	66		0.997452
1596	18		81		0.999994
1656		87		12	0.992554
1767	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
447	467	TTGATT TTGATT TTGATT TTG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain