SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28046

Length: 573 nt

UniGene Fasta

>sp_v3.0_unigene28046
TCTGTTCCAGCACAACACCCATAGCAATGCAGAGCAGATTATAGACACAGCGACTCCACAGTATATACTCTTAAACATCCTGCATGCACCATAATCATCCCCCTTTCAGTTAAATGCTGGTTCTCATAGCAGTCTAATCTATAAACTATAATGGAGTTTACATCGACCTCAGTTCACGGGGTCCATAGAATGGCCGCGGTCACATCGATTCTATACCATCCGGCATTTGCCCGGAGTTCGAATCCCATCAGGAAAATGCTTTTGAATTCAAAATCGTCAGCGTGGGTAGGATCCCGCTGCCACAGCGGAGTGGTTTTGGAAAACCCATACGGGTCTAGGACTTTGAAAGGTGACCGTATAAGGCCTAAAAGGGTCACAGCTTTTGCCTCGCTGGCGGTACCTCAGGAAGCTGCGCCTAAGATTCAAGCGGACGATGACTTTAAGTCGATTGTTTTGCCTACTAACGAGAGCTCTAAGACGCTTCTTTGCATTCGCCACACGAGTGCTCATGTTCTGGCCATGGCTGTCCAAAAAGTTTTTCCAGATGCGAAGGTCACAATAGGTCCATGGATT

Ace file of the UniGene sp_v3.0_unigene28046

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative threonyl-tRNA synthetase, putative / threonine--tRNA ligase [Arabidopsis thaliana] gb\|AEC05873.1\| putative threonyl-tRNA synthetase, putative / threonine--tRNA ligase [Arabidopsis thaliana]	-	-	8.0e-12	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	Gene names
Sma3	PHATR_33493; PHYPADRAFT_130801; PHYPADRAFT_179146; VITISV_002009;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	threonine-tRNA ligase activity	GO:0004829	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	threonyl-tRNA aminoacylation	GO:0006435	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Threonyl-tRNA synthetase, class IIa	IPR002320	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3		IPR018158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04842.1	EMB2761 threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative chr2:1698466-1701271 REVERSE LENGTH=650	6.0e-15	79%
RefSeq	Arabidopsis thaliana	NP_671778.1	putative threonyl-tRNA synthetase, putative / threonine--tRNA ligase [Arabidopsis thaliana]	7.0e-15	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ4

Fln msg: Distance to subject end: 541 aas, your sequence is shorter than subject: 141 - 682

Fln protein: MEFTSTSVHGVHRMAAVTSILYHPAFARSSNPIRKMLLNSKSSAWVGSRCHSGVVLENPYGSRTLKGDRIRPKRVTAFASLAVPQEAAPKIQADDDFKSIVLPTNESSKTLLCIRHTSAHVLAMAVQKVFPDAKVTIGPWI

Protein Length: 142

Fln nts: TCTGTTCCAGCACAACACCCATAGCAATGCAGAGCAGATTATAGACACAGCGACTCCACAGTATATACTCTTAAACATCCTGCATGCACCATAATCATCCCCCTTTCAGTTAAATGCTGGTTCTCATAGCAGTCTAATCTATAAACTATA_-_ATGGAGTTTACATCGACCTCAGTTCACGGGGTCCATAGAATGGCCGCGGTCACATCGATTCTATACCATCCGGCATTTGCCCGGAGTTCGAATCCCATCAGGAAAATGCTTTTGAATTCAAAATCGTCAGCGTGGGTAGGATCCCGCTGCCACAGCGGAGTGGTTTTGGAAAACCCATACGGGTCTAGGACTTTGAAAGGTGACCGTATAAGGCCTAAAAGGGTCACAGCTTTTGCCTCGCTGGCGGTACCTCAGGAAGCTGCGCCTAAGATTCAAGCGGACGATGACTTTAAGTCGATTGTTTTGCCTACTAACGAGAGCTCTAAGACGCTTCTTTGCATTCGCCACACGAGTGCTCATGTTCTGGCCATGGCTGTCCAAAAAGTTTTTCCAGATGCGAAGGTCACAATAGGTCCATGGATT

Fln Alignment:

Contig28046___MEFTSTSVHGVHRMAAVTSILYHPAFARSSNPIRKMLLNSKSSAWVGSRCHSGVVLENPYGSRTLKGDRIRPKRVTAFASLAVPQEAAPKIQADDDFKSIVLPTNESSKTLLCIRHTSAHVLAMAVQKVFPDAKVTIGPWI
B8LPQ4_______________MEFTSTSVHRVHRMAAVTSILCSPASARSSNTTRKMLLNSKSSAWAGSHCHSRVVLENPYWYRVLNGDRIRLKRIAAFASLAAPQEAAPKIQADDDFKPIVLPTNETSKTLLCIRHTSAHVLAMAVQKVFPDAKVTIGPWI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain