SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28042

Length: 478 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28042 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L22, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MSB0_PHYIT	-	-	2.0e-25	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	60S ribosomal protein L22-2	-	-	8.276e-20	-

Source	Gene names
Sma3	At1g02830; At3g05560; At5g27770; CHLREDRAFT_195131; F18C1.17; F22D16.17; GSVIVT00022695001; GSVIVT00022727001; GSVIVT00028015001; GSVIVT00033010001; LOC_Os03g22340; MICPUCDRAFT_31192; MICPUN_90144; OSTLU_9463; Os03g0343500; Os07g0674200; OsI_11522; OsI_27

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L22e	IPR002671	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G02830.1	Ribosomal L22e protein family chr1:625145-625608 REVERSE LENGTH=127	5.0e-23	61%
RefSeq	Arabidopsis thaliana	NP_171782.1	large subunit ribosomal protein L22e [Arabidopsis thaliana]	7.0e-23	61%
RefSeq	Populus trichocarpa	XP_002315515.1	predicted protein [Populus trichocarpa]	7.0e-22	56%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
163	71		28		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
45	56	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain