SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28023

Length: 739 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene28023 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heavy metal ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GF99_POPTR	-	-	5.0e-23	67%
FL-Next	Isoform 2 of Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1	-	-	0.0	66%
Sma3	Heavy metal ATPase	-	-	8.757e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Copper-exporting ATPase.	EC:3.6.3.4	-	1.347e-06	-

Source	Gene names
Sma3	At4g33520; At4g33520/F17M5.280; At4g33525; F17M5.280; GSVIVT00000268001; LOC_Os03g27040; OSJNBb0058G04.4; Os03g0388100; OsI_11856; OsI_29667; OsJ_11098; OsJ_27728; P0481F05.16; PAA1; PHYPADRAFT_117222; PHYPADRAFT_215914; POPTRDRAFT_171466; POPTRDRAFT_4151

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	copper-exporting ATPase activity	GO:0004008	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	copper ion transport	GO:0006825	Biological Process	-
Sma3	photosynthetic electron transport chain	GO:0009767	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cof protein	IPR000150	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Bacterial sugar transferase	IPR003362	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33520.2	PAA1, HMA6 P-type ATP-ase 1 chr4:16118993-16125849 FORWARD LENGTH=949	2.0e-26	65%
RefSeq	Arabidopsis thaliana	NP_567924.1	putative copper-transporting ATPase PAA1 [Arabidopsis thaliana]	7.0e-27	66%
RefSeq	Populus trichocarpa	XP_002299685.1	heavy metal ATPase, partial [Populus trichocarpa]	3.0e-27	67%

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
480	492	ACG ACG ACG ACG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain