SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27971

Length: 2344 nt

UniGene Fasta

>sp_v3.0_unigene27971
TCCAATTGTACTTCTACCACGGTTGCTTATCTCACTTATTGGTGCTTATTAATAAATAAAAATTTGCAAATTGGAACTTTGATGACCTTCAGGTTGGAATGGATACGCATTAAAAGACCAAAAGAGTGGACTTACTTGGTGCCTGGGACTAAATCTACCGAAGAATCTTCTTAGGTCGAGTTTGAGAAGAAGTGCCTGGATGGATGAATGAATTTCTGGTCCTCTGAAAAACAACAAGTAGTGTAATGGTACAGTTAGGCAGATTGGGTTTGAGTTTCAATTGGCAAATGAGAATGGAAATTGGATTTTTTTGCTTACCCTCCGATCGAGAAGGCAACAATGGATGATGATCGGTGCCTTGTGACAGGTCGGTGGGTTTAAAATCTGTGGCAAAAGCTTAAAAGTGAATATAATTGGTTGGTGGGTGTAAAATCTCCTGGAATTTTGCGCAGAATTGAGTATTATGAGTTACAGTGGGTTATTCATATGGCCAGCCCCTACACTGGCAAGTAGAATTCATCTTCCAAAAAGCTATTCAATCAATAAACTTACAATAATAAGGGCATTTTGCTGCTGAGACGCGCCCAAAAATGCTGAATAGAAGCAGCCTAAGTGTTGGTGAAGATAACAGCAACGCTAGCCTACTACCCAGATCCCAGTATAATAAGCGAGAATGGCCTCAGAAGCTCTTGCGGTTTTTACTCTTCTTTATATTATTGGGTTCAGGGATCATCATAGGGGTGGTGGTTAGCTCCCATCTGACCTACTATTTGGGCAGCAGGGAGAGCAATTATACGCTATTCTACCCGCCCTTCGTATCCCAATCTCCTCCGTGCAATCTTAAGAAAGAAGAGGAAAAAGAAAAAATGCCTGTCAAGCTTGATGATTGGATCAAGCCTTCTAGTTCAATGCATAACATGACAGATGATGAACTCCTGTGGAGGGCCTCCATGGTACCCCTAAGGAAAGATTATCCGTTCCGTGTGCCGAAGGTTGCTTTCATGTTCCTGACAAAGGGTCCTATTCCCCTCATGCCCTTGTGGGAGAAATTCTTTCATGGGTACCAAGGATTGTATTCGATTTACGTTCATTCTCTTCCAGATTATAAGCTCAAGACGAGTCCAAGTTCGCCGTTCTATAATCGCCAAATACCCAGCAAGATAGCAGAGTGGGGACGTATGAGTATGTGTGATGCAGAAAGGCGACTTCTAGCAAATGCTTTGCTCGACTTCTCAAATAACAGATTCATACTTTTATCTGAAACCTGTATTCCTTTGTTTAATTTCACTACGGTTTATAAATATTTGATCATGTCGCGGCATAGTTTTGTGAGTGCCTTTGATGATCATGGTCCATTTGGAAGGGGGCGTTACAACAAAAATATGGAACCTGAAGTAACTATAGATCAATGGCGTAAGGGATCCCAGTGGTTTGAAGTTAATCGCAAGCTGGCAGTGAATATAGTTGCTGACGACATTTACTATCCAAAATTCGAGAAGTTTTGCACACCAGCTTGTTATGTTGATGAGCATTATTTCCCTACCATGTTGAGCATTGATTTTGGGTCATTCATTGCCAACAGAAGTGTAACTTGGGTTGACTGGTCAAGGGGAGGCTCTCATCCAGGAATGTTTGGAAAGGGGGATATCAGAGAGGACTTTATTGGGAGGATTCGTAATGGCCGGAGCTGCATATACAATAACCAAACTACTTATATATGCCATCTCTTTGCTCGAAAGTTTGCACCAAGTGCATTGGATCCTTTGTTACAGCTTTCAGAAAAGGTAATGGGATTTGGCTAACAACATATTCAAAGTTGATGTATCATCACAGTTGAACATTCCTGTAAAAGCAGTATGCTTGACTTCAATATCATTTGGATTGCCTTAGCCATTCCCACCCTTGTGAAAATGCATTTCGTTGAGTGGAGAATTGGAACCACAATCCGAACCACAGTTTGTCAATCACTTCCTCTTCACTTCTGTGATTAACAAAAGTAGGTTACCTTTGGTTTGTTATCTCATGGCTTATGAGAAGACAATAATTTGTATTTATAAACATTTGCGTTGGTGTCGCTGTGTCAGTTACTTTATGTTCACATATATTACCTTTGTATTAATCTTTCATAGTAATATATAATTGGTCTTAGATTATATAGTGTACAAGGGTGTTTGAAATAATTTATTCTTAACTCTTGTTCGTGATTTTGACACAATATTTTCATTCCTTGACAAGAGGGACCGAAGATAGTTATTTGTAACAAGCTACTTCATGTAGCTTCTGAGAGCATGCAACATATACATCCCTGAAGAAAATAATATGAAGTCATTTTTACAGTCCTTAC

Ace file of the UniGene sp_v3.0_unigene27971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb\|CAB87691.1\| putative protein [Arabidopsis thaliana] gb\|AAM13183.1\| putative protein [Arabidopsis thaliana] gb\|AAP68292.1\| At5g11730 [Arabidopsis thaliana	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Putative uncharacterized protein At2g19160	-	-	4.041e-08	-

Source	Gene names
Sma3	At1g10280; At1g10880; At1g51770; At1g62305; At1g68380; At1g68380/T2E12_7; At1g68390; At1g73810; At1g73810/ F25P22.23; At2g19160; At2g19160/T20K24.18; At5g11730; At5g25970; F19C24.28; GSVIVT00001515001; GSVIVT00017713001; GSVIVT00017714001; GSVIVT000177150

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Polymerase/histidinol phosphatase, N-terminal	IPR003141	-	-
Sma3	Glycosyl transferase, family 14	IPR003406	-	-
Sma3	Adaptor protein ClpS, core	IPR003769	-	-
Sma3	PHP, C-terminal	IPR004013	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	DNA polymerase III, alpha subunit	IPR004805	-	-
Sma3		IPR004949	-	-
Sma3	ATPase, AFG1-like	IPR005654	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Bacterial DNA polymerase III, alpha subunit	IPR011708	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11730.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein chr5:3780963-3782473 FORWARD LENGTH=386	66%
RefSeq	Arabidopsis thaliana	NP_196734.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002309520.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB94

Fln msg: your sequence is longer than subject: 404 - 345

Fln protein: MLNRSSLSVGEDNSNASLLPRSQYNKREWPQKLLRFLLFFILLGSGIIIGVVVSSHLTYYLGSRESNYTLFYPPFVSQSPPCNLKKEEEKEKMPVKLDDWIKPSSSMHNMTDDELLWRASMVPLRKDYPFRVPKVAFMFLTKGPIPLMPLWEKFFHGYQGLYSIYVHSLPDYKLKTSPSSPFYNRQIPSKIAEWGRMSMCDAERRLLANALLDFSNNRFILLSETCIPLFNFTTVYKYLIMSRHSFVSAFDDHGPFGRGRYNKNMEPEVTIDQWRKGSQWFEVNRKLAVNIVADDIYYPKFEKFCTPACYVDEHYFPTMLSIDFGSFIANRSVTWVDWSRGGSHPGMFGKGDIREDFIGRIRNGRSCIYNNQTTYICHLFARKFAPSALDPLLQLSEKVMGFG*

Protein Length: 405

Fln nts: TCCAATTGTACTTCTACCACGGTTGCTTATCTCACTTATTGGTGCTTATTAATAAATAAAAATTTGCAAATTGGAACTTTGATGACCTTCAGGTTGGAATGGATACGCATTAAAAGACCAAAAGAGTGGACTTACTTGGTGCCTGGGACTAAATCTACCGAAGAATCTTCTTAGGTCGAGTTTGAGAAGAAGTGCCTGGATGGATGAATGAATTTCTGGTCCTCTGAAAAACAACAAGTAGTGTAATGGTACAGTTAGGCAGATTGGGTTTGAGTTTCAATTGGCAAATGAGAATGGAAATTGGATTTTTTTGCTTACCCTCCGATCGAGAAGGCAACAATGGATGATGATCGGTGCCTTGTGACAGGTCGGTGGGTTTAAAATCTGTGGCAAAAGCTTAAAAGTGAATATAATTGGTTGGTGGGTGTAAAATCTCCTGGAATTTTGCGCAGAATTGAGTATTATGAGTTACAGTGGGTTATTCATATGGCCAGCCCCTACACTGGCAAGTAGAATTCATCTTCCAAAAAGCTATTCAATCAATAAACTTACAATAATAAGGGCATTTTGCTGCTGAGACGCGCCCAAAA_-_ATGCTGAATAGAAGCAGCCTAAGTGTTGGTGAAGATAACAGCAACGCTAGCCTACTACCCAGATCCCAGTATAATAAGCGAGAATGGCCTCAGAAGCTCTTGCGGTTTTTACTCTTCTTTATATTATTGGGTTCAGGGATCATCATAGGGGTGGTGGTTAGCTCCCATCTGACCTACTATTTGGGCAGCAGGGAGAGCAATTATACGCTATTCTACCCGCCCTTCGTATCCCAATCTCCTCCGTGCAATCTTAAGAAAGAAGAGGAAAAAGAAAAAATGCCTGTCAAGCTTGATGATTGGATCAAGCCTTCTAGTTCAATGCATAACATGACAGATGATGAACTCCTGTGGAGGGCCTCCATGGTACCCCTAAGGAAAGATTATCCGTTCCGTGTGCCGAAGGTTGCTTTCATGTTCCTGACAAAGGGTCCTATTCCCCTCATGCCCTTGTGGGAGAAATTCTTTCATGGGTACCAAGGATTGTATTCGATTTACGTTCATTCTCTTCCAGATTATAAGCTCAAGACGAGTCCAAGTTCGCCGTTCTATAATCGCCAAATACCCAGCAAGATAGCAGAGTGGGGACGTATGAGTATGTGTGATGCAGAAAGGCGACTTCTAGCAAATGCTTTGCTCGACTTCTCAAATAACAGATTCATACTTTTATCTGAAACCTGTATTCCTTTGTTTAATTTCACTACGGTTTATAAATATTTGATCATGTCGCGGCATAGTTTTGTGAGTGCCTTTGATGATCATGGTCCATTTGGAAGGGGGCGTTACAACAAAAATATGGAACCTGAAGTAACTATAGATCAATGGCGTAAGGGATCCCAGTGGTTTGAAGTTAATCGCAAGCTGGCAGTGAATATAGTTGCTGACGACATTTACTATCCAAAATTCGAGAAGTTTTGCACACCAGCTTGTTATGTTGATGAGCATTATTTCCCTACCATGTTGAGCATTGATTTTGGGTCATTCATTGCCAACAGAAGTGTAACTTGGGTTGACTGGTCAAGGGGAGGCTCTCATCCAGGAATGTTTGGAAAGGGGGATATCAGAGAGGACTTTATTGGGAGGATTCGTAATGGCCGGAGCTGCATATACAATAACCAAACTACTTATATATGCCATCTCTTTGCTCGAAAGTTTGCACCAAGTGCATTGGATCCTTTGTTACAGCTTTCAGAAAAGGTAATGGGATTTGGCTAA___CAACATATTCAAAGTTGATGTATCATCACAGTTGAACATTCCTGTAAAAGCAGTATGCTTGACTTCAATATCATTTGGATTGCCTTAGCCATTCCCACCCTTGTGAAAATGCATTTCGTTGAGTGGAGAATTGGAACCACAATCCGAACCACAGTTTGTCAATCACTTCCTCTTCACTTCTGTGATTAACAAAAGTAGGTTACCTTTGGTTTGTTATCTCATGGCTTATGAGAAGACAATAATTTGTATTTATAAACATTTGCGTTGGTGTCGCTGTGTCAGTTACTTTATGTTCACATATATTACCTTTGTATTAATCTTTCATAGTAATATATAATTGGTCTTAGATTATATAGTGTACAAGGGTGTTTGAAATAATTTATTCTTAACTCTTGTTCGTGATTTTGACACAATATTTTCATTCCTTGACAAGAGGGACCGAAGATAGTTATTTGTAACAAGCTACTTCATGTAGCTTCTGAGAGCATGCAACATATACATCCCTGAAGAAAATAATATGAAGTCATTTTTACAGTCCTTAC

Fln Alignment:

Contig27971___LFYPPFVSQSPPCNLXXXXXXXXMPVKLDDWIKPSSSMHNMTDDELLWRASMVPLRKDYPF-RVPKVAFMFLTKGPIPLMPLWEKFFHGYQGLYSIYVHSLPDYKLKTSPSSPFYNRQIPSKIAEWGRMSMCDAERRLLANALLDFSNNRFILLSETCIPLFNFTTVYKYLIMSRHSFVSAFDDHGPFGRGRYNKNMEPEVTIDQWRKGSQWFEVNRKLAVNIVADDIYYPKFEKFCTPACYVDEHYFPTMLSIDFGSFIANRSVTWVDWSRGGSHPGMFGKGDIREDFIGRIRNGRSCIYNNQTTYICHLFARKFAPSALDPLLQLS
D5AB94_______________LLSPPISSQGAVCSRKED------PVRFEHWSRPPTLMHTMSDRELLWRASMVPLRRKYSFERVPKIAFMFLTRGPLPFLPLWARFLRGHEGLYSIYVHPLPSFTLNVSNTSPFYRREIPSQVVEWGEANMCDAETRLLANALLDFSNERFILLSETCIPVFNFSTIYNYLIKSKHSFVHSFDDPRPEGRGRYNIKMAPEVTLSQWRKGSQWFEVHRKLAIDIISDTKYYQIFKAFCKPSCYIDEHYIPTILSMQFGSLISNRSITWVDWSRGGSHPAMFGKDDITQEFMMSIRDVNNCTYNDQTMSLCFLFARKFSPSALDPLLNMS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
187			33	66	0.997452
206	66		33		0.997452
288		50	50		1.0
361		33		66	1.0
599	66			33	0.997452
608			40	60	1.0
636		40		60	1.0
823	36			63	1.0
2156		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain