SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27946

Length: 3732 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene27946
ATGGGGGAAGAGATACTAACGAATCTACATCCGCACCATCCTCTTTGAAACGATTGGGAACGGATTTTGCGAGAAATCACGAGTCGAACAATAACACAAGACAAGACAAACGATAGGTGGTTGTATAACGCTCCCCACTTTACAGTTTACCAGGAGCTCAAAAGATAGCCAGGCATGCATAAACCCCCTTAATGACTCGAGGGACTTAAGAGGGTTCCTTCCATGTGCCCCCTTTGTTGCAGAGGGTGCGGGCATGGAGAGGGCCGAGCGGCTGGACTTCGATGGCGTTAAAGGCGTGAGGAAGCCACGGACATTTTCGGTAAGGAAGCCCAGATCGGGAGGATCCCATGCAACGTTTCTCAACGAGTACGAGCATTCGTCGCCGTCGGATTCCCCGCCCTCAGATCCTCGAAGTGCTGGAAATGTTGATAAGGGTTTGAACGAAGAACCTGGTAAGTATTCTAATCCTCATTCTCATGCTGATGATTACAAGAGAAGGCTAGGGAGTAGTAATAGCAAGGGTAAATTTGAGATGGGGAAGGATGATTTGGGTAAAAGTAATAAGTCGGCTAGTCACAGAAGGGCTGGTGGAGATGATGACTGGGTGCCCGAGAGGGATGAAATGAAGAGGGTTCGGAGGGATGCTGCAGACCATAATGGCAAGCATTCCGGCAGGAGCCCAGATAATGATAGGAATCATGACAGGAAGTATGATAGAGGGGGTTCCAAGCCTCAGGAGTATGAGCGGAGTAAGAGGCCTGACAAGTCTTTCAGGGAGAAAAGTCACAGGGATGGGTCTCATTATGAGAGGGATTCCAAGGAGTATTCGACCGGGGAGAAGGCCGAGAAGGAAAGGGGCAGATTTGGTGAAACATTCAAGCGGAAGCGGCACTGTGATGATTTAGATCGCTCGAAGCGGTTTCGTGATGGTGGGATGGACAGGAAGGATTCTTATGAGAGGAATGGTAGTCATGACAGATTGGACCGTGATCGTGAAAGGGACCGGGATAGGAATAGGGATCGAGATGTGCAGGGCAATGTGAAAAGCAGCGAAGGCGGCCAAGGCCCCAGTCATGTTCACAAAAGTCTGATTGGGGGATTGGGTGCAGGTGGGTCTTCGGGGGACTGGCGTAATTCTGATGGGCACAAAGTGCCGGAGAGAAGATCCTCAGATTCCCACAATCTGAGTCAACTAAAAGGAGGAACGGACTCCGGGCATAGTAGAATGACAGATGGAGGTAGGAGGGCAGAAGGGCGGACTATGGATAGTCGTCATGCAGGACAATCAAAATCAGCTAGCGAAGGTCAGAATGGGGGACAAGTCAAAACACCGCTTGATGGAAGAACCTCTCATAACAGGGATTCTGATATGAAGTCTTTGGATAAATCAGTGCTACGGCAAGATGATCCGCCTTCTCAAGAGGGTCGGTTGACAAAGGTGAAGCTTAAGGTAGGTGGAGTTACTCATACTATTCATGCAAATTCCACTGGCAATCCAGGAGGAACCAAACAGAAGGGCTTGGAAGCCTCATCTGCATCTGGGAAGCCTCCACAAGCAACTGAAGGTGGGAGACGGCGTCAGAGACTTATTCTTCAGGAAAATTCGGATGATGAAGATGATTTCCCTGCAAGGGTGGAAATGCAAGAATCACCTAAGAAGGAACTTCAGTTTTATACCAATGCATCTGTTGCAAAAATGGATACACATCATGCCAAGGAAATTACCTCTGGAAAGCAGGTAGAAATGACTAATAATATTGTAGCTGGCCAACCTGTTCGCAAAAGTACAAGGATACCTAAGAAACGCATACTGGATGGTGAACATGATGAGGATGATGATGGCGAGGAAGCATCACAGCGTAAAATCTCAAGGAACACCAAGAAACGTGTTCCAGTTGGTGAGTATGAGGAAGATGAGGAGGGACATGAAACATCTCAGCGACGTAGTTTAAGGATGCCTAAGAAGCGGATGGTGGATGCTGAATATGATGAAGATGATGAGGAAGATGAAATACAGCAGCATAAAAGAAGATTGAAAAGGTCAAAATATGAAAGGGATTCAGAAGATTTATATCAGGAAGATGATGAAGAAGAAGCTGCATCAGCCGATGAAGATGCAGAAATTGTGGATGCTGAACTTGAAGGAAAGAAGAAGAGAAGCAGACGAAAACAAGAAGTTGGAAATTCAACTTTTGATGATAAGAAGGAAGCTCCCCTTACTGCACGCCAAAGGGCTATGCAGTCATGCAAAGATGTTGATTCAGAAGTAGGAGCAAATCTGATCGAATTTCCAGAAGGACTGCCTCAGACCAGTCAGAGAAAACGGAAAGAAAAGTTATCAGAGGTGGAACAACAATTGAAGAAAGCAGAGGCAGCTCAGAGACGCAAGATGCAAGTAGAGAAGGCTGCAAATGAGATTCAGGCTGAGGCCATCAAGAAGATTCTAGGTCAGGACTCATTAAGGAAGAAACGGGAAGATAAGCTACGGAAGCAAAGAGATGAGATGGCACAGGAGAAGGCTGCTAGTGCTATGATGCTTGCATCAAACAGTGTGAGATGGGTAATGGGGCCTTCTGGCACAGTTGTTTCATTTTCTGAAAATACAGGGCTTCCGAGTATATTCAATTCTGGTCCATGCAGGTATCCTCCACCTCGTGAGAAATGTGCTGGGCCATTATGTAACAATACATATAAATATAGAGACTCTAAGTCTAAGCTCCCTTTATGCAGTCTTCAGTGTTACCGTGCGATACATGATGTTACACACACTGTCTCCACTTGTTAGTGTTGCAGAACTCGATTGCTGTGTTTTATGCCCCCTCTCAAGAGCACAGGCACACAAGCACAGTACATGTTCATGCCATTTTTGGGAATAAATTTTAGTGCATTTGGCAGTAGAGTTTTTGATGTATATGTGTTTGAATCATTCGAGACGGAGAAGGGGTGGCACATGCTGTATCTATCCAAGAGGAGGCTTCATAATATCATGTTGAAGCTCATGTTTAGAATAAACGGGGACCTGAGTTGGACATACTTGTATCTAAAGAATCATTTTTATGTATAGATAAATCAATTATACGGGGAAGATTTGAGATGAATACATCAAGATGTTAATTGTTCGAATCCATTAGCTGGAGAAGATTTGGAACAGTGGTGGTTTACTTGCAAAGGGGATTTCGTCTGCTGCTATAATTGATTTAGCCGTTGTATATGTTATGCAGCTCGAATAGTGTGGTTAATGTTCTTACTATTGCACCGAGGGATATTCTGGTTGTAAATATGCCTTGCATCTCTTCTTTTGTTTCACGGGTACGTGGATTTTTTGGATCCAATGTAGGCCTACTATTCTAGAACCATGACAAAGATGTAAAGATGACAATAACGTTGGCCATCGTATTATGTGGCAATGCCCTAACAAGTTCAATTTTGTCTTGAACGTTGGTGCTGTACATCTCACCTTTGATAATTTGTTTCGATCACTAAACAAAGTTACCATGTCTATAAAGCTCCGAAGATTGGTTCAACGTCAGCATACATACTCGAACATCGCAAACGCACTGGCAACTTTTGTACTTCATTGCTATTTTGCCTTTGTGCTGCCCTTTTGTACGTGCATTTTGTTGGACTTTCGTGCACTTCAATAATGTGCATTATTGCTAACTTGCATTTGGCATGGTAGATGACTTGTTCTTAACAATTAAGTACAATCCTGGGACAACATCTTGTTTTGGG

Ace file of the UniGene sp_v3.0_unigene27946 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33398.1\| HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	At1g56460; At1g56460/F13N6_4; At3g06660; F3E22.21; GSVIVT00022598001; GSVIVT00028124001; Os12g0561200; OsI_14024; POPTRDRAFT_564395; POPTRDRAFT_570710; POPTRDRAFT_673850; POPTRDRAFT_678389; POPTRDRAFT_755654; POPTRDRAFT_807475; POPTRDRAFT_811236; RCOM_100

Source	GOs	Term	Type	e value	Identity
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	0.0	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	PAPA-1-like conserved region	IPR006880	-	-
Sma3	Zinc finger, HIT-type	IPR007529	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002318948.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS52

Fln msg: your sequence is longer than subject: 844 - 407

Fln protein: MERAERLDFDGVKGVRKPRTFSVRKPRSGGSHATFLNEYEHSSPSDSPPSDPRSAGNVDKGLNEEPGKYSNPHSHADDYKRRLGSSNSKGKFEMGKDDLGKSNKSASHRRAGGDDDWVPERDEMKRVRRDAADHNGKHSGRSPDNDRNHDRKYDRGGSKPQEYERSKRPDKSFREKSHRDGSHYERDSKEYSTGEKAEKERGRFGETFKRKRHCDDLDRSKRFRDGGMDRKDSYERNGSHDRLDRDRERDRDRNRDRDVQGNVKSSEGGQGPSHVHKSLIGGLGAGGSSGDWRNSDGHKVPERRSSDSHNLSQLKGGTDSGHSRMTDGGRRAEGRTMDSRHAGQSKSASEGQNGGQVKTPLDGRTSHNRDSDMKSLDKSVLRQDDPPSQEGRLTKVKLKVGGVTHTIHANSTGNPGGTKQKGLEASSASGKPPQATEGGRRRQRLILQENSDDEDDFPARVEMQESPKKELQFYTNASVAKMDTHHAKEITSGKQVEMTNNIVAGQPVRKSTRIPKKRILDGEHDEDDDGEEASQRKISRNTKKRVPVGEYEEDEEGHETSQRRSLRMPKKRMVDAEYDEDDEEDEIQQHKRRLKRSKYERDSEDLYQEDDEEEAASADEDAEIVDAELEGKKKRSRRKQEVGNSTFDDKKEAPLTARQRAMQSCKDVDSEVGANLIEFPEGLPQTSQRKRKEKLSEVEQQLKKAEAAQRRKMQVEKAANEIQAEAIKKILGQDSLRKKREDKLRKQRDEMAQEKAASAMMLASNSVRWVMGPSGTVVSFSENTGLPSIFNSGPCRYPPPREKCAGPLCNNTYKYRDSKSKLPLCSLQCYRAIHDVTHTVSTC*

Protein Length: 845

Fln nts: ATGGGGGAAGAGATACTAACGAATCTACATCCGCACCATCCTCTTTGAAACGATTGGGAACGGATTTTGCGAGAAATCACGAGTCGAACAATAACACAAGACAAGACAAACGATAGGTGGTTGTATAACGCTCCCCACTTTACAGTTTACCAGGAGCTCAAAAGATAGCCAGGCATGCATAAACCCCCTTAATGACTCGAGGGACTTAAGAGGGTTCCTTCCATGTGCCCCCTTTGTTGCAGAGGGTGCGGGC_-_ATGGAGAGGGCCGAGCGGCTGGACTTCGATGGCGTTAAAGGCGTGAGGAAGCCACGGACATTTTCGGTAAGGAAGCCCAGATCGGGAGGATCCCATGCAACGTTTCTCAACGAGTACGAGCATTCGTCGCCGTCGGATTCCCCGCCCTCAGATCCTCGAAGTGCTGGAAATGTTGATAAGGGTTTGAACGAAGAACCTGGTAAGTATTCTAATCCTCATTCTCATGCTGATGATTACAAGAGAAGGCTAGGGAGTAGTAATAGCAAGGGTAAATTTGAGATGGGGAAGGATGATTTGGGTAAAAGTAATAAGTCGGCTAGTCACAGAAGGGCTGGTGGAGATGATGACTGGGTGCCCGAGAGGGATGAAATGAAGAGGGTTCGGAGGGATGCTGCAGACCATAATGGCAAGCATTCCGGCAGGAGCCCAGATAATGATAGGAATCATGACAGGAAGTATGATAGAGGGGGTTCCAAGCCTCAGGAGTATGAGCGGAGTAAGAGGCCTGACAAGTCTTTCAGGGAGAAAAGTCACAGGGATGGGTCTCATTATGAGAGGGATTCCAAGGAGTATTCGACCGGGGAGAAGGCCGAGAAGGAAAGGGGCAGATTTGGTGAAACATTCAAGCGGAAGCGGCACTGTGATGATTTAGATCGCTCGAAGCGGTTTCGTGATGGTGGGATGGACAGGAAGGATTCTTATGAGAGGAATGGTAGTCATGACAGATTGGACCGTGATCGTGAAAGGGACCGGGATAGGAATAGGGATCGAGATGTGCAGGGCAATGTGAAAAGCAGCGAAGGCGGCCAAGGCCCCAGTCATGTTCACAAAAGTCTGATTGGGGGATTGGGTGCAGGTGGGTCTTCGGGGGACTGGCGTAATTCTGATGGGCACAAAGTGCCGGAGAGAAGATCCTCAGATTCCCACAATCTGAGTCAACTAAAAGGAGGAACGGACTCCGGGCATAGTAGAATGACAGATGGAGGTAGGAGGGCAGAAGGGCGGACTATGGATAGTCGTCATGCAGGACAATCAAAATCAGCTAGCGAAGGTCAGAATGGGGGACAAGTCAAAACACCGCTTGATGGAAGAACCTCTCATAACAGGGATTCTGATATGAAGTCTTTGGATAAATCAGTGCTACGGCAAGATGATCCGCCTTCTCAAGAGGGTCGGTTGACAAAGGTGAAGCTTAAGGTAGGTGGAGTTACTCATACTATTCATGCAAATTCCACTGGCAATCCAGGAGGAACCAAACAGAAGGGCTTGGAAGCCTCATCTGCATCTGGGAAGCCTCCACAAGCAACTGAAGGTGGGAGACGGCGTCAGAGACTTATTCTTCAGGAAAATTCGGATGATGAAGATGATTTCCCTGCAAGGGTGGAAATGCAAGAATCACCTAAGAAGGAACTTCAGTTTTATACCAATGCATCTGTTGCAAAAATGGATACACATCATGCCAAGGAAATTACCTCTGGAAAGCAGGTAGAAATGACTAATAATATTGTAGCTGGCCAACCTGTTCGCAAAAGTACAAGGATACCTAAGAAACGCATACTGGATGGTGAACATGATGAGGATGATGATGGCGAGGAAGCATCACAGCGTAAAATCTCAAGGAACACCAAGAAACGTGTTCCAGTTGGTGAGTATGAGGAAGATGAGGAGGGACATGAAACATCTCAGCGACGTAGTTTAAGGATGCCTAAGAAGCGGATGGTGGATGCTGAATATGATGAAGATGATGAGGAAGATGAAATACAGCAGCATAAAAGAAGATTGAAAAGGTCAAAATATGAAAGGGATTCAGAAGATTTATATCAGGAAGATGATGAAGAAGAAGCTGCATCAGCCGATGAAGATGCAGAAATTGTGGATGCTGAACTTGAAGGAAAGAAGAAGAGAAGCAGACGAAAACAAGAAGTTGGAAATTCAACTTTTGATGATAAGAAGGAAGCTCCCCTTACTGCACGCCAAAGGGCTATGCAGTCATGCAAAGATGTTGATTCAGAAGTAGGAGCAAATCTGATCGAATTTCCAGAAGGACTGCCTCAGACCAGTCAGAGAAAACGGAAAGAAAAGTTATCAGAGGTGGAACAACAATTGAAGAAAGCAGAGGCAGCTCAGAGACGCAAGATGCAAGTAGAGAAGGCTGCAAATGAGATTCAGGCTGAGGCCATCAAGAAGATTCTAGGTCAGGACTCATTAAGGAAGAAACGGGAAGATAAGCTACGGAAGCAAAGAGATGAGATGGCACAGGAGAAGGCTGCTAGTGCTATGATGCTTGCATCAAACAGTGTGAGATGGGTAATGGGGCCTTCTGGCACAGTTGTTTCATTTTCTGAAAATACAGGGCTTCCGAGTATATTCAATTCTGGTCCATGCAGGTATCCTCCACCTCGTGAGAAATGTGCTGGGCCATTATGTAACAATACATATAAATATAGAGACTCTAAGTCTAAGCTCCCTTTATGCAGTCTTCAGTGTTACCGTGCGATACATGATGTTACACACACTGTCTCCACTTGTTAG___TGTTGCAGAACTCGATTGCTGTGTTTTATGCCCCCTCTCAAGAGCACAGGCACACAAGCACAGTACATGTTCATGCCATTTTTGGGAATAAATTTTAGTGCATTTGGCAGTAGAGTTTTTGATGTATATGTGTTTGAATCATTCGAGACGGAGAAGGGGTGGCACATGCTGTATCTATCCAAGAGGAGGCTTCATAATATCATGTTGAAGCTCATGTTTAGAATAAACGGGGACCTGAGTTGGACATACTTGTATCTAAAGAATCATTTTTATGTATAGATAAATCAATTATACGGGGAAGATTTGAGATGAATACATCAAGATGTTAATTGTTCGAATCCATTAGCTGGAGAAGATTTGGAACAGTGGTGGTTTACTTGCAAAGGGGATTTCGTCTGCTGCTATAATTGATTTAGCCGTTGTATATGTTATGCAGCTCGAATAGTGTGGTTAATGTTCTTACTATTGCACCGAGGGATATTCTGGTTGTAAATATGCCTTGCATCTCTTCTTTTGTTTCACGGGTACGTGGATTTTTTGGATCCAATGTAGGCCTACTATTCTAGAACCATGACAAAGATGTAAAGATGACAATAACGTTGGCCATCGTATTATGTGGCAATGCCCTAACAAGTTCAATTTTGTCTTGAACGTTGGTGCTGTACATCTCACCTTTGATAATTTGTTTCGATCACTAAACAAAGTTACCATGTCTATAAAGCTCCGAAGATTGGTTCAACGTCAGCATACATACTCGAACATCGCAAACGCACTGGCAACTTTTGTACTTCATTGCTATTTTGCCTTTGTGCTGCCCTTTTGTACGTGCATTTTGTTGGACTTTCGTGCACTTCAATAATGTGCATTATTGCTAACTTGCATTTGGCATGGTAGATGACTTGTTCTTAACAATTAAGTACAATCCTGGGACAACATCTTGTTTTGGG

Fln Alignment:

Contig27946___SSASGKPPQATEGGRRRQRLILQENSDDEDDFPARVEMQESPKKELQFYTNASVAKMDTHHAKEITSGKQVEMTNNIVAGQPVRKSTRIPKKRILXXXXXXXXXXXEASQRKISRNTKKRVPVGXXXXXXXXXETSQRRSLRMPKKRMVXXXXXXXXXXXEIQQHKRRLKRSKYERDSEDLYQXXXXXXXXXXXXXXXXXXXXXEGKKKRSRRKQEVGNSTFDDKKEAPLTARQRAMQSCKDVDSEVGANLIEFPEGLPQTSQRKRKEKLSEVEQQLKKAEAAQRRKMQVEKAANEIQAEAIKKILGQDSLRKKREDKLRKQRDEMAQEKAASAMMLASNSVRWVMGPSGTVVSFSENTGLPSIFNSGPCRYPPPREKCAGPLCNNTYKYRDSKSKLPLCSLQCYRAIHDVTHTVS
C0PS52_______________TTASAKPPRTSEGVQRRQRLI----------------LQENSDDEDDFSPNTE---------QRFQESPKHSLTIKIRAA--VRHSDSTVKEDI--------------RSKSLDGGIFRRIDTTNGSPPLQPV----RKSSRIPKKYVPEDEYVEDEEDYEAPQSKRKLKS---ERGLEELYQDDDDDKGPPSSNEDSESSDSEIDDVKR--RKVDSPSSIVDSKKEVPLTARQRAVQFSRTVP-EARESLIEFPDGLPHFSQRKRQEKIPEFEQQLKKADAAQRRRMQAEKAAQKIQDDAIKKILGQDTLKQKREEKLRRQRDEMAQEKRDAAKTIAPNTIRWVIGPSGTVVSFSEDAEFLGIFNSVPCRYPPAREKCAGPSCNNTYKYRDSKSNLPLCSLLCYRAIHDMAQPLS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
415	85			14	0.993533
416	14			85	0.993533
583		83	16		0.994512
611			11	88	0.923564
637	22			77	0.999999
3216		60		40	1.0
3278	83		16		0.994512
3346		18		81	0.999994
3467			81	18	0.999994
3495		42		57	1.0
3496			57	42	1.0
3497		57		42	1.0
3498	57			42	1.0
3500		57	42		1.0
3504	25		75		0.996473
3505			75	25	0.996473
3506		25	75		0.996473
3507		25	75		0.996473
3508			75	25	0.996473
3509		75		25	0.996473
3510	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain