SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27891

Length: 820 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27891

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short-chain type dehydrogenase/reductase n=1 Tax=Picea abies RepID=SDR1_PICAB	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Short-chain type dehydrogenase, putative	-	-	3.415e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	8.422e-08	-

Source	Gene names
Sma3	AT4g13180; At3g03980; At3g04000; At4g13180; F17N18.70; GSVIVT00025486001; GSVIVT00025488001; LOC_Os03g53690; LOC_Os10g31780; OSJNBa0050F10.22; OSJNBa0050F10.23; OSJNBa0069E14.13; Os03g0748100; Os06g0185100; Os07g0170000; Os07g0561500; Os10g0456100; OsI_13

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to arsenic-containing substance	GO:0046685	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:7657373-7658164 REVERSE LENGTH=263	61%
RefSeq	Arabidopsis thaliana	NP_193054.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002319165.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
69		33		66	0.997452
73	33		66		0.997452
103	50		50		1.0
117		50		50	1.0
179			14	85	0.993533
209		66		33	1.0
219	50		50		1.0
230			50	50	1.0
240		33	33	33	0.997753
261	66	33			0.997452
269	83		16		0.994512
281	83		16		0.994512
290		14		85	0.993533
305		71		28	1.0
321	85	14			0.993533
402	83	16			0.994512
427		66		33	1.0
437		83		16	0.994512
460			83	16	0.994512
462			83	16	0.994512
466		83	16		0.994512
483		33		66	1.0
489		83		16	0.994512
494	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
7	18	GGT GGT GGT GGT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain