SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27874

Length: 545 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene27874 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative 60S ribosomal protein RPL26 n=1 Tax=Phoronis muelleri RepID=B2YI44_9BILA	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	60S ribosomal protein L26	-	-	6.311e-11	-

Source	Gene names
Sma3	At3g49910; At5g67510; CHLREDRAFT_136811; F3A4.4; GSVIVT00002862001; GSVIVT00012534001; GSVIVT00019661001; GSVIVT00038278001; K9I9.7; LOC_Os11g05370; LOC_Os12g05430; MICPUCDRAFT_30848; MICPUN_91267; OSTLU_8655; Os01g0140500; Os11g0151300; Os12g0150100; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49910.1	Translation protein SH3-like family protein chr3:18504311-18504751 FORWARD LENGTH=146	63%
RefSeq	Arabidopsis thaliana	NP_190560.1	60S ribosomal protein L26-1 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304321.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
115		40		60	1.0
385	77		22		0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain