SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27830

Length: 1261 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene27830 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein A, putative n=1 Tax=Ricinus communis RepID=B9S7W0_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Xyloglucan endotransglycosylase	-	-	1.07199e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g11545; At2g06850; At2g14620; At3g23730; At3g25050; At4g03210; At4g13080; At4g13090; At4g14130; At4g25820; At4g37800; At5g13870; At5g48070; At5g57530; At5g57540; At5g57550; At5g57560; At5g65730; EXGT; EXGT-A1; EXGT-A4; EXGT-A5;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G14620.1	XTH10 xyloglucan endotransglucosylase/hydrolase 10 chr2:6244889-6246010 FORWARD LENGTH=299	51%
RefSeq	Arabidopsis thaliana	NP_179069.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002313201.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM96

Fln msg:

Fln protein: MSTNGAYLWALVWASVISAGLGLGNGNFDDDFYIMWSPDHVTRLYNGHGVQISMDRQSGSGFATKKQYLFGKFEMQIKLPPGNSAGTVVAVYLYSNQPNRDEIDIEFLGNVDGKDIIMQTNVFANGYDDREQRIKLWFDPTADFHTYTIFWNRYHIIFLVDGFPIRVHQNNAVRGIPFPRMQPMSLYTTIWNGESWATNGGKTKITWEPYPFVAQFRNFYIDGCEWNGNPRFCKGGSTQNWWNKRTYANFNAGDRLKLHWVRKHYLVYDYCNDKVRFKVAPEECRYHI*

Protein Length: 290

Fln nts: ATGGGGAATCCAAGACATTCCATTCTTCTCTGGTTATTTTCAATCTCTGAAGTGGGGGTTAAATTTCAAGACTGGTCCTGTCTGACGTATTGAAA_-_ATGTCGACCAACGGTGCCTATCTATGGGCCTTGGTGTGGGCTTCTGTTATATCTGCAGGTTTAGGCCTTGGAAATGGAAACTTTGATGATGATTTTTACATTATGTGGTCACCTGATCATGTCACCAGGCTGTACAATGGACATGGCGTGCAGATTAGTATGGACAGGCAGTCAGGTTCGGGCTTCGCAACGAAGAAACAATATTTGTTTGGCAAGTTCGAAATGCAAATCAAGCTTCCACCAGGAAATTCTGCGGGCACTGTTGTAGCTGTTTATTTGTATTCCAATCAGCCAAACAGAGACGAGATCGATATTGAATTTTTGGGCAATGTTGATGGCAAGGACATCATCATGCAGACTAATGTTTTTGCTAATGGCTACGATGATCGAGAGCAGCGGATCAAACTCTGGTTTGATCCCACAGCAGATTTTCACACATACACAATCTTTTGGAACCGTTACCACATTATATTTCTGGTAGATGGCTTCCCCATCAGAGTGCATCAAAACAATGCAGTGCGAGGCATACCATTTCCAAGAATGCAGCCTATGTCTTTATACACAACCATATGGAATGGGGAGAGCTGGGCAACCAACGGAGGAAAGACAAAGATCACCTGGGAGCCTTACCCATTTGTTGCTCAGTTCAGGAACTTTTACATCGATGGCTGTGAGTGGAATGGAAACCCTAGGTTCTGCAAGGGAGGCAGCACACAAAATTGGTGGAATAAGAGAACATATGCTAACTTTAACGCTGGGGATAGACTCAAACTCCATTGGGTAAGGAAGCATTATCTCGTCTATGACTACTGTAATGACAAGGTCAGATTCAAAGTAGCCCCTGAGGAATGCAGGTACCACATTTAA___TCCATAGCCTGCCGAGCATTTTTTAGTATTTGGTAATAAGACAGTCTGGTGGAGGAGAGTCACTTTCCATTACCGGATGCTACAGAACAAGCGTGTGGAGCCCAGTAGCTCCTTTGAGAATTTCTGAAATCTGCATATTGAACCCAGAGCTCCTTTGAGAATTTCATATGTGAAAGCTGTGTTATTTTGTATAAATTTGAGCTCATATGTGAAAGCTGTGTTATTTTGTATAAATTTGAGCTCGGAAGCTACATTGTTTTATATTAATATTTAATATACCATATTTATTTGTTATTAGG

Fln Alignment:

Contig27830___VTRLYNGHGVQISMDRQSGSGFATKKQYLFGKFEMQIKLPPGNSAGTVVAVYLYSNQPNRDEIDIEFLGNVDGKDIIMQTNVFANGYDDREQRIKLWFDPTADFHTYTIFWNRYHIIFLVDGFPIRVHQNN-AVRGIPFPRMQPMSLYTTIWNGESWATNGGKTKITWEPYPFVAQFRNFYIDGCE-WNGNPRFCKGGSTQNWWNKRTYANFNAGDRLKLHWVRKHYLVYDYCND-KVRFKVAPEECRYH
A9NM96_______________VTMLNNGQTAQLTMDKASGSGFQSKKEYLFGIVSMRIKLVSGNSAGTVTSYYMSSDASSHDELDYEFLGNLPGKPYTLQTNVFANGVGNREQRIRLWFDPTAGFHNYSILWNHKQIVFWVDSIPIRVFKNNEEAAGIPYPNRRPMKILSTLWNGDSWATDGGRVKVDWDIAPFVASYQSFQVDACSVSSGSSLPC----ANNWWDQPEFQSLNQYQLRRIHWVRKHYMTYDYCHDTSGRFSAAPAECAFN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
414	16		83		0.994512
528	83		16		0.994512
544		33		66	1.0
872		18		81	0.999994
978		27		72	1.0
1011	55		44		1.0
1056		10		90	0.90298
1058	80	20			0.999996
1066	90			10	0.90298
1067	10			90	0.90298
1068	10		90		0.90298
1119	85	14			0.993533
1120	85	14			0.993533
1123			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain