SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27827

Length: 1294 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27827

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine synthase n=2 Tax=Picea sitchensis RepID=B8LQB8_PICSI	-	-	0.0	86%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	ECs	Term	Type	e value	Identity
Sma3	Cysteine synthase.	EC:2.5.1.47	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Sulfur metabolism	00920	%
Sma3	Metabolic pathways	01100	%

Source	GOs	Term	Type	Identity
Sma3	cysteine synthase activity	GO:0004124	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cysteine biosynthetic process from serine	GO:0006535	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61440.1	" ATCYSC1, ARATH;BSAS3;1, CYSC1 cysteine synthase C1 chr3:22735885-22737792 FORWARD LENGTH=368"	76%
RefSeq	Arabidopsis thaliana	NP_191703.1	cysteine synthase C1 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002301362.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR69

Fln msg:

Fln protein: MVHLSKVTEGCVANVVAKLEMMQPCCSVKDRVGYAMILDAEEKGLISPEKSVLVEPTSGNMGIALSYIAASRGYKLVLTMPSYTSLERRVTMRAFGSDLVLTDPVKGMGGAVKKAADLLEKTPNAFMLQQFENPANVKTHFETTGPEIWEDTAGQVDIFVMGIGSGGTVSGVGRYLKSKNPNVKIYGLEPAESNILNGGKPGPHQITGTGVGFTPKILDLDILDGVIEVSSDDAIKMARELATKEGLMVGISSGANTVAAIQLAKRPENKNKLIVTVHPSFGERYLSSVLFQELRNEAEMMQPVSVD*

Protein Length: 309

Fln nts: CCAGAGCACACTTGTGGAAATTAGAATCTGTGTAATAATGTGATCCTTTGTTCACATTTTTGAAAGCTATGTAGATACTAACAGAACTTTCTCTGTCATAAGTACAGTTGATAGCAAGAACCCCC_-_ATGGTACATCTGAGCAAAGTAACTGAGGGCTGTGTGGCTAACGTAGTGGCCAAACTGGAAATGATGCAACCTTGTTGCAGTGTCAAGGACAGGGTTGGATATGCCATGATTCTGGACGCTGAGGAGAAAGGACTCATTTCGCCAGAGAAGAGTGTATTGGTGGAGCCAACATCTGGAAATATGGGAATTGCGTTGTCTTATATTGCTGCGAGCAGGGGATACAAACTTGTACTCACAATGCCCTCATATACAAGCTTGGAAAGACGAGTGACCATGCGTGCCTTCGGCTCTGACCTTGTTCTCACAGATCCTGTAAAAGGCATGGGGGGTGCTGTTAAGAAGGCCGCTGACCTTCTGGAGAAAACCCCCAATGCATTCATGCTTCAGCAGTTTGAGAATCCTGCTAATGTCAAGACCCATTTTGAGACCACGGGACCTGAGATCTGGGAAGACACTGCAGGCCAAGTTGATATATTCGTGATGGGAATTGGGAGCGGTGGCACTGTCTCGGGAGTTGGTAGATACCTGAAGAGCAAAAATCCCAATGTCAAGATTTATGGGCTTGAGCCAGCAGAAAGCAACATTTTGAATGGTGGAAAGCCAGGTCCACATCAGATCACAGGTACTGGAGTTGGTTTTACTCCCAAGATTTTAGACCTGGATATCCTTGATGGAGTGATAGAGGTATCCAGTGATGATGCTATAAAAATGGCGCGAGAGCTAGCTACGAAGGAAGGCCTCATGGTTGGAATTTCTTCTGGGGCCAACACAGTTGCAGCAATTCAATTAGCAAAAAGGCCAGAGAATAAAAACAAACTTATAGTGACTGTACATCCAAGCTTTGGAGAACGATACCTGTCATCTGTTTTATTTCAAGAATTGAGAAATGAAGCGGAAATGATGCAACCGGTGTCAGTGGATTGA___TCATCTTAAAGTCACCTGTGCTTCATTCATATCCTGATTCTCATGGATATATTTTGATAATTAAGACTTATCAAATCTGATTTTCCAAATTTGGTTATACTTTGAGAATACTTTTAATTGTATTAATAGCACGTTTCTCTGTATTATAAATAAAAATTAGAAGATTTAAATGTGCATTATCTTGAAACAATTTTTTTTAGCATTTTATTCATTACAGTGCATGATAAATATAATTGGGGTAGTAT

Fln Alignment:

Contig27827___MVHLSKVTEGCVANVVAKLEMMQPCCSVKDRVGYAMILDAEEKGLISPEKSVLVEPTSGNMGIALSYIAASRGYKLVLTMPSYTSLERRVTMRAFGSDLVLTDPVKGMGGAVKKAADLLEKTPNAFMLQQFENPANVKTHFETTGPEIWEDTAGQVDIFVMXXXXXXXXXXXXRYLKSKNPNVKIYGLEPAESNILNGGKPGPHQITGTGVGFTPKILDLDILDGVIEVSSDDAIKMARELATKEGLMVGISSGANTVAAIQLAKRPENKNKLIVTVHPSFGERYLSSVLFQELRNEAEMMQPVSVD
A9NR69_______________MVYLNKVTEGCGAYVAAKLEMMQPCCSIKDRVGYAMILDAEEKGLISPEKSVLVEPTSGNMGIALSYIAASRGYKLVLTMPSYTSLERRVTMRAFGSELVLTDPVKGMGGAVKKAADLLQSTPNAFMLQQFDNPANVKAHFETTGPEIWEDTAGQVDIFVMGIGSGGTVSGVGRYLKSKNPNVKIYGLEPAESNILNGGKPGPHQITGTGVGFTPKILDLDILDGVIEVSSDDALKMARELAWKEGLMVGISSGANTVAALQLARRPENKNKLIVTVHPSFGERYLSSMLFQELRQEAEMMQPVSVD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
314		50		50	1.0
374		40		60	1.0
755	85	14			0.999981
1126		85		14	1.0
1127	4			95	0.995055
1140		13		86	1.0
1160		82	17		1.0
1199	75		24		1.0
1224	12	70		4	1.0
1225	5	27			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain