SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27780

Length: 623 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27780

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase (Fragment) n=5 Tax=Pseudotsuga RepID=C6F9P9_PSEMZ	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Sma3	Beta-amylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AMY1; AMYB1; AT4G15210; AT4g17090; At3g23920; At4g15210; At4g17090; BAM1; BMY1; Bmy1; CHLREDRAFT_183141; GSVIVT00015862001; GSVIVT00020394001; GSVIVT00020399001; LOC_Os03g04770; LOC_Os10g32810; LOC_Os10g41550; MICPUCDRAFT_21290; MICPUN_108038; OJ1729_E01.

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose biosynthetic process	GO:0000024	Biological Process	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17090.1	CT-BMY, BAM3, BMY8 chloroplast beta-amylase chr4:9605266-9607250 REVERSE LENGTH=548	58%
RefSeq	Arabidopsis thaliana	NP_567523.1	beta-amylase 3 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002326690.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
221			66	33	0.997452
225	66		33		0.997452
245	33		66		0.997452
253		33		66	0.997452
270			33	66	0.997452
271	33		66		0.997452
286		33	66		0.997452
289			66	33	0.997452
292		66	33		0.997452
295			33	66	0.997452
300		66		33	0.997452
309	33		66		0.997452
311	33		66		0.997452
331		66	33		0.997452
343	33		66		0.997452
347	66		33		0.997452
368		33	66		0.997452
378	33		66		0.997452
385		66		33	0.997452
388			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain