SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27773

Length: 459 nt

UniGene Fasta

>sp_v3.0_unigene27773
TTGCGATGGATCGGTGCTCCTGAATTCAACAGATTCAACGAAAGCGGAAAAGGATGCATTTCCAAATCTGAGCCTGAGAGGATTCCAAGTCATTGACGCAGCCAAAGCTGCAGTGGAGAAGATATGCCCGGGAGTAGTGTCATGCGCCGATATTGTTGCGCTCGTCGCAAGAGATGGTGTCCATATGTTGGGGGGACCATTCTGGAACGTTCCAACGGGACGTAGAGATGGAGTAGTATCTCTTGCGAAAGAAGCTCTCACTAAACTTCCTGCGCCCACCGCGAATTTCTCGCAACTCACATCAATATTTGCAAGCAATCGTCTTGATGTTCAAGACCTTGTTGTCTTATCAGGCGCCCACACAATAGGGGTTTCCCACTGTACCTCCTTTAGCAACCGGCTTTACAATTTTACTGGAAAAGGAGATATGGATCCGTCTTTGGACAAGTATTATGCAGC

Ace file of the UniGene sp_v3.0_unigene27773

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA: class III peroxidase 89 precursor [Oryza sativa Japonica Group] gb\|EAZ38042.1\| hypothetical protein OsJ_22386 [Oryza sativa Japonica Group] gb\|EEC81190.1\| hypothetical protein OsI_24196 [Oryza sativa Indica Group]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Peroxidase	-	-	3.24961e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g05240; At1g05250; At1g05260; At1g49570; At2g39040; At2g41480; At3g01190; At3g21770; At4g11290; At4g33870; At5g05340; At5g15180; At5g42180; At5g51890; B1135C02.47; B1386G10.20; F14J22.19; F17I5.60; F8L21.80; F8M21_70; GMIPER1; GSVIVT00003644001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to desiccation	GO:0009269	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05260.1	RCI3, RCI3A Peroxidase superfamily protein chr1:1529827-1531271 FORWARD LENGTH=326	63%
RefSeq	Arabidopsis thaliana	NP_172018.1	peroxidase 3 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002309830.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 152 - 324

Fln protein: CDGSVLLNSTDSTKAEKDAFPNLSLRGFQVIDAAKAAVEKICPGVVSCADIVALVARDGVHMLGGPFWNVPTGRRDGVVSLAKEALTKLPAPTANFSQLTSIFASNRLDVQDLVVLSGAHTIGVSHCTSFSNRLYNFTGKGDMDPSLDKYYA

Protein Length: 153

Fln nts: TTGCGATGGATCGGTGCTCCTGAATTCAACAGATTCAACGAAAGCGGAAAAGGATGCATTTCCAAATCTGAGCCTGAGAGGATTCCAAGTCATTGACGCAGCCAAAGCTGCAGTGGAGAAGATATGCCCGGGAGTAGTGTCATGCGCCGATATTGTTGCGCTCGTCGCAAGAGATGGTGTCCATATGTTGGGGGGACCATTCTGGAACGTTCCAACGGGACGTAGAGATGGAGTAGTATCTCTTGCGAAAGAAGCTCTCACTAAACTTCCTGCGCCCACCGCGAATTTCTCGCAACTCACATCAATATTTGCAAGCAATCGTCTTGATGTTCAAGACCTTGTTGTCTTATCAGGCGCCCACACAATAGGGGTTTCCCACTGTACCTCCTTTAGCAACCGGCTTTACAATTTTACTGGAAAAGGAGATATGGATCCGTCTTTGGACAAGTATTATGCAGC

Fln Alignment:

Contig27773___CDGSVLLNSTDSTKAEKDAFPNLSLRGFQVIDAAKAAVEKICPGVVSCADIVALVARDGVHMLGGPFWNVPTGRRDGVVSLAKEALTKLPAPTANFSQLTSIFASNRLDVQDLVVLSGAHTIGVSHCTSFSNRLYNFTGKGDMDPSLDKYYA
A9P1P4_______________CDGSVLLNSTKSRKAEKEAAPNLTLRGFQVIDAAKAAVEKVCPGVVSCADILALVARDAVHMLGGPFWNVPTGRRDGVVSIQNEAVAKLPPPNGTFSKLKSIFASNGLDVKDLVVLSGGHTIGMSHCNSFSSRLYNFTGKGDMDPSLDKSYA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
75	16			83	0.994512
186		20		80	0.995493
320		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain