SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27763

Length: 1040 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene27763 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1929 domain containing protein	-	-	2.0e-26	36%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	57%
Sma3	Glyoxal oxidase	-	-	1.617e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	8.086e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		8.086e-15	%

Source	Gene names
Sma3	AT3G53950; At1g19900; At1g67290; At1g75620; At3g53950; At3g53950/F5K20_250; At3g57620; At5g19580; B1144G04.6; F14L17.20; F15B8.190; F5K20_250; F6F9.4; GSVIVT00000516001; GSVIVT00014487001; GSVIVT00015939001; GSVIVT00016700001; GSVIVT00021405001; GSVIVT000

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G53950.1	glyoxal oxidase-related protein chr3:19975704-19977341 FORWARD LENGTH=545	50%
RefSeq	Arabidopsis thaliana	NP_190963.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002322929.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SED3

Fln msg: your sequence is shorter than subject: 227 - 453

Fln protein: AAPVWTMSNMPMRRCMGDMIILPSGEVLIINGAGRGSQGYGFASEPVLNPVSYNPGQRTFSVLQATTIPRVYHSTANLLADGRVLVAGSNTHLLYTFSGTFPTELRVEAFSPPYLASVWNAIRPQITKAPATVRHGQTFTVFFSLTGQLTALEMNLLSAPFTTHSFAQGQRMLRLKLAAAVRVGTNTYSVSVTAPPNGNIAPPAYYMLFPLTQGIPGIAAWIQITN*

Protein Length: 228

Fln nts: CGGCGGCACCTGTTTGGACGATGTCGAACATGCCCATGAGAAGATGCATGGGCGACATGATCATTCTTCCTTCTGGCGAAGTGCTTATAATCAATGGCGCCGGACGGGGCTCTCAGGGCTACGGCTTCGCTTCAGAACCCGTCTTGAATCCAGTGAGTTACAATCCAGGACAGCGTACGTTTTCTGTCCTCCAAGCCACCACGATTCCCCGCGTCTATCATTCCACTGCGAATTTGTTGGCGGATGGCCGTGTATTGGTTGCTGGGAGTAATACTCATCTGTTATATACTTTCAGCGGGACCTTTCCCACGGAGTTGAGAGTGGAAGCTTTCTCGCCTCCGTATCTCGCCAGTGTTTGGAACGCTATACGCCCACAGATCACGAAGGCCCCTGCTACTGTTCGCCATGGGCAGACGTTTACTGTGTTTTTTTCTCTAACTGGTCAGCTCACAGCCTTGGAGATGAATCTTCTGAGTGCACCATTCACAACCCATTCGTTTGCTCAGGGCCAGCGCATGTTGAGGCTGAAATTGGCGGCAGCTGTTCGTGTGGGAACCAATACGTATTCTGTCTCTGTCACGGCTCCTCCCAACGGGAATATTGCACCACCAGCTTATTACATGTTGTTTCCGCTGACACAGGGCATCCCCGGCATCGCAGCCTGGATTCAAATCACGAATTAG___AGACGAGGCAGACAATAAGCGCTGGTTCGGAGCTCTGGATAGTGAGCGTGCGTTTGATTTGAATTAGCCAGTCATTGCTATGTAAATTTGAAATGTACATACCCATTGTTTACGGCCATTAGGCTGAAGCGTTTGTTAAAACAAACAAACTTGCCGCAGAATAAATAATCCGTTTGTTTAAGTCCTTTAGGCTTAAACTTTTGTTATATGCATAAACAAACTTGGTGTTGAAAGTAACCATCCCCTAAAAGAACTTGTATTTTTATGATATTAATGATAATATAAAGTACTTGAATATAAGCCATAGTTTCTCTATGGGAAATTGACAAAGAAAATGGATATTATTTATATAATTAC

Fln Alignment:

Contig27763___APVWTMSNMPMRRCMGDMIILPSGEVLIINGAGRGSQGYGFASEPVLNPVSYNPGQRTFSVLQATTIPRVYHSTANLLADGRVLVAGSNTHLLYTFSGTFPTELRVEAFSPPYLASVWNAIRPQITKAPATVRHGQTFTVFFSLTGQLTALEMNLLSAPFTTHSFAQGQRMLRLKLAAAVRVGTNTYSVSVTAPPNGNIAPPAYYMLFPLTQGIPGIAAWIQITN
A9SED3_______________APKWAMQNMPIRRTMGDMINLPTGDVLIINGALNGYQGWGKANNPALNPVNYNVARKTFQVYAKTNIPRMYHSTANLLPDGRILVAGSNTHQFYTYRGAYPTELRVEAFSPPYLAGGNGAVKPAIKAYPKALKYKQNFVITFGIGRRVGGVEVNMLSAPFVTHSFAQGQRLMKLKTAAPVKAGAN-WSVGVTAVPGNTIAPPAWYMFFVVQNGVPSKAVWIKQNN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
73			25	75	0.996473
107		75	25		0.996473
145	75		25		0.996473
399		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain