SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27762

Length: 563 nt

UniGene Fasta

>sp_v3.0_unigene27762
CAGGAGGGGCAAGATAGCAGCCCAGCCCTAATTTTGTGAACCCTCGACTCCCATTATTTGTGCACGTTTATTAGGGTTTTGGTGGTCTCTTTTGAGCTAGAATCGGAGGATCGGCTCAGTCCACCCAGGTTTCAGTGAGTATTTACATTATTCACCCTCTCTTATTGCCGAGGGCTTCCTTTCTCGGAGACCACCCACACAATAATAATCGTTTTCACTTTCGAGGTTCGATTCTCATGCCCTCTCTGTTTCGTGGCAAGATTATACAATTGTAGACCGTAGTGCTTCTAAAACCCAGAAACTAATGTGGACATTCTCATTTATATTCCAGTAGGATCTGTACTGATGTTGAAAGCGATTTTTTGCTGAAATTTAGTTCAAACGATGTTGATTCTTCATTCGCATGTGAAGCAGGCGAATTCAAATCATGTCGGATCGGCTGACTAGGATTGCAATAGTGAGCTCGGATCGCTGCAAGCCCAAGAAATGCAGGCAGGAGTGTAAGAAGAGCTGTCCTGTTGTCAAAACAGGTGGGCTTTGCCATTTATTGTTTTCATTTCAAG

Ace file of the UniGene sp_v3.0_unigene27762

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter E family member 2 n=13 Tax=Spermatophyta RepID=AB2E_ARATH	-	-	1.0e-13	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	RNase L inhibitor-like protein	-	-	7.961e-08	-

Source	Gene names
Sma3	AT4g19210; At3g13640; At4g19210; GSVIVT00001176001; LOC_Os11g34350; MICPUN_64787; Os11g0546000; OsI_36424; OsJ_34194; PHATRDRAFT_1048; POPTRDRAFT_414071; POPTRDRAFT_827499; RCOM_0739710; T18B16.180; VITISV_021090;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	RNase L inhibitor RLI, possible metal-binding domain	IPR007209	-	-
Sma3	ABC transporter, ABCE	IPR013283	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19210.1	ATRLI2, RLI2 RNAse l inhibitor protein 2 chr4:10501906-10504776 FORWARD LENGTH=605	3.0e-17	94%
RefSeq	Arabidopsis thaliana	NP_193656.2	ABC transporter E family member 2 [Arabidopsis thaliana]	4.0e-17	94%
RefSeq	Populus trichocarpa	XP_002328845.1	predicted protein [Populus trichocarpa]	4.0e-17	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR96

Fln msg: Distance to subject end: 560 aas, your sequence is shorter than subject: 45 - 605

Fln protein: MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGGLCHLLFSFQ

Protein Length: 46

Fln nts: CAGGAGGGGCAAGATAGCAGCCCAGCCCTAATTTTGTGAACCCTCGACTCCCATTATTTGTGCACGTTTATTAGGGTTTTGGTGGTCTCTTTTGAGCTAGAATCGGAGGATCGGCTCAGTCCACCCAGGTTTCAGTGAGTATTTACATTATTCACCCTCTCTTATTGCCGAGGGCTTCCTTTCTCGGAGACCACCCACACAATAATAATCGTTTTCACTTTCGAGGTTCGATTCTCATGCCCTCTCTGTTTCGTGGCAAGATTATACAATTGTAGACCGTAGTGCTTCTAAAACCCAGAAACTAATGTGGACATTCTCATTTATATTCCAGTAGGATCTGTACTGATGTTGAAAGCGATTTTTTGCTGAAATTTAGTTCAAACGATGTTGATTCTTCATTCGCATGTGAAGCAGGCGAATTCAAATC_-_ATGTCGGATCGGCTGACTAGGATTGCAATAGTGAGCTCGGATCGCTGCAAGCCCAAGAAATGCAGGCAGGAGTGTAAGAAGAGCTGTCCTGTTGTCAAAACAGGTGGGCTTTGCCATTTATTGTTTTCATTTCAAG

Fln Alignment:

Contig27762___MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGGLC
B8LR96_______________MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
198		20		80	0.995493
207	80			20	0.995493
257		25		75	0.996473
299	66		33		0.997452
325	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain