SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27625

Length: 3448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene27625
TGCGTTTGATTTTGCTGGTGTGCTGTTGCAGGAGAATGTGGGATCGCGGGTTCGAACTTCGTGGAGTGTAGGGTTTTGGTTTGGAAAGAGGAGAGAAGGACGAACGAGAGGAGTAGGGAAGGGCAGTTATTGATTGCGTGCGCGCCTGGCTTATCGCATCTCGACATTCGCGGATCGAATCTCACAAACTCCAGGCGGCCTCCGCATTGTGAGATCGGCGCAGCTTCCATATAGGCGGGGCTGCCGATGGGTTCGTTTTCTATCAGTTAGAAGACGGAGGAAGCGGAGGAGGACAACGTACTTATACTATTATTGTTGTCAAAAGTCTTTCCAACTTATGCCAAAGATCCATTCTTGCATTCACTGAAGTGAAAGGATCCAGGCTTGGGCAGGGTGCTTATTCCTTTTTTTGTTCATGTGACTCCCCGGCGGGTGGGGCGTCGTTTGGTTCTTATGTATGGCAACCAATTTTGAGTTTCAAGAATGGTGGAACAAGGAGAAGGAGATCCACAGGGGCACTTCCGTGGTAGTGAAAATGGAGAATCCAAATTGGTCCATGGTGGAATTGCAAAGCCCCGACGACGATTTCCAGCACTCAGATAAGCAGGGCCGGGGCAAAAATGCCAGGCAACTTACCTGGGTTTGGCTGCTGAAAGCCCATCGCGCCGCGGGCTGTGTCGCCTGGCTCGCGCAGGGGCTATGGAGCCTTCTCTCCGCCGTAAAAAGAAGGGTCACTTTGAACAAGAATCAAAATCGTGGGACAGAGGAAGACAAACCAGGGAAAAGTAAACTGTACAGAGTCATTAGAGGGTTTTTGTTATTTGCCATTTTGATGCTAGGGTTTGAGATTGCGGCTTATATGAAAGGTTGGCACTTTAGCCGCCCTCATTTCGACTTTTCTCCGTCGCTGGACTTGCAGGGCGTTTTGCATTCCATTTATTCTGAATGGGTATTTGTTAGGGCCACTTATCTTGCCCCTCCTCTTCAGACATTGGCCAACATTTGTATTGTACTGTTTCTTATCCAGTCGGCAGATAGACTGGTGTTGGCGATGGGGTGCCTATGGATCCACATTAAAAAGATTAAGCCGGTGCCCCAATTCGAATTCCCAAGTTCAGCAGCGGATTTGGAAAAAGGTGCATCAGCAGACTATCCGATGGTTTTGGTTCAGATTCCCATGTGTAACGAAATGGAGGTTTATCAGCAATCTATTGCTGCAGTATGTAACTTAGACTGGCCAAAAGAACGGATGCTTGTGCAAGTTCTTGATGATTCGGATGATGTAGATGTGCAGTTACTTATTAAGTCAGAAGTGCAGAAATGGCAACAGAAGGATATTAACATTGTCTACAAACACCGAGTGGTCCGCACTGGCTATAAGGCTGGGAACCTTAAGTCTGCGATGGCTTGTGATTATGTGAAGGACTATGAATTTGTTGCCATTTTTGACGCAGACTTTCAGCCCAGTCCAGATTTTTTGAAAAAAACTGTGCCACATTTCAAGGGCAATGAAGATGTGGCTTTGGTGCAAGCAAGGTGGGCTTTTGTTAACAAGGATGAGAATTTATTGACAAGGTTGCAGAATATAAACTTGGCTTTCCATTTTGAGGTCGAGCAGCAGGTTAATGGTGTATTCATCAATTTCTTTGGTTTTAATGGGACTGCTGGTGTCTGGAGAATCAAAGCCCTTGAGGAGTCAGGGGGCTGGTTGGAAAGAACTACTGTGGAGGACATGGATATTGCTGTACGTGCTCACCTAAACGGATGGAAATTTATATATCTTAATGATGTTCAGTGCCTGTGTGAGCTACCGGAGTCTTATGAAGCATACCGAAAGCAGCAGCATCGATGGCATTCAGGTCCAATGCAGTTATTCCGGTTGTGTCTACCAGACATAATCCGTTCTAAGGAGATTGGTTTCTCGAAGAAGGCCAACTTAATATTCCTTTTCTTTTTGCTGCGAAAGCTCATTCTCCCTTTCTATTCATTCACTCTTTTCTGCATCATCCTTCCAATGACTATGTTTTTGCCAGAAGCTCAATTGCCATCTTGGGTCATATGCTATGTGCCGGCTATCATGTCATTCTTTAATATACTTCCTGCACCAAGATCGTTCCCTTTCATTGTTCCATATCTTCTCTTTGAAAACACAATGTCTGTAACAAAATTCAATGCCATGATCTCTGGGCTCTTTCAACTTGGCAGTGCTTATGAATGGGTGGTGACAAAAAAGTTGGGCAGATCATCTGAAGCTGATTTAGTTGCTTTTATGGAGAAGGAATCACATCCTCAATTAGAACACCCAAGGCATCATCGGGGTGTTTCAGAGTCAGGCCTTGATGTCCTCAACAAATTAAGTGAACAGCAGCAGAAACAACCCTTTAAAAAGAAAGCCAATCGGCTTTATAGGAAAGAATTGGCTTTAGCTTTTCTTCTTTTAACAGCATCTGCTAGGAGTTTATTGTCTGCTCAAGGAATTCATTTTTACTTTTTACTGTTTCAAGGGGTCTCTTTCCTCCTTGTTGGCCTTGATTTGATTGGAGAGCAGGTTAGTTGAATTCCACAGCATAAAGCTTGGGCAACCTCTTTACAAATTGCCTTGCCTTGTAATGTTCTTTGACACTAACTGGAGACCTGATTTTAGGCCAAGATTCAAGTGAGCACAACTTTGAATAAATGTCGCTGCAGGCCTAGAAATTTCAGGGTATGGTTTTGCAGATGTATTAAGAAGTTGGAGATATGAATATAGCACTTGATCATGCAGGGTAATATGGTGATGACGGGATCCTGAAAAGTGGTTAAGTTTAAGCCATCACCCTTTTGGGGATTCAGAGTAACAGATATTTCACCAAATATTTGTATGTTTATTATGAAAGCAGCAGCCTTGTCATTCCAACGTCAAGTGTCACATTTTCATGGCTGAGTATGTTCACAAGAAGTGATTGTGCACCAAGATAATATTATTCTGGGGTCTATTTATGACTGTGCAAATCACAATGAGAGTCTGCTCTCGCGAATTGGTAATGCCCATAGATTGTTGCCTACGCATGCCTCTGATGTATCTTAGATTTCAGTGCTCCAGCATAATTCTTTATTGTCTTCCCTATTCTTGTGATTCTGGGTCAATTTTTTTTATTGGAAACATTTTTTAATAGGTGCGAGCCTGATTAAAAGAGGTTTAGGGTGAATTGTCTACATTACGAAGTTCTTTTCTGGCCTATTTGGCAGATATATGTAGGCTTATTTATTGTTGAACATTAGAAGATGTATTCCATATTGTATATCCAATTGCACAGATGGGTTAAACCAGAAAATTTGTTGACCTCTCTTTTGCCTAACCTCCTTCACATTTCTTCCTTTGATCGTATTTGATTAAACTTTGTGTGTTCATGTTCCCCTGTGCATCCAGATTAAATTTCTAATATAAATTGTGCAATTAGCATATACT

Ace file of the UniGene sp_v3.0_unigene27625 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase-like C1-1, glycosyltransferase family 2 protein n=2 Tax=Selaginella moellendorffii RepID=D8RV47_SELML	-	-	0.0	64%
FL-Next	tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine).	-	-	0.0	47%
Sma3	Transferase, transferring glycosyl groups, putative	-	-	1.354e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	8.62999e-40	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		8.62999e-40	%
Sma3	N-Glycan biosynthesis	00510		8.62999e-40	%
Sma3	Mucin type O-Glycan biosynthesis	00512		8.62999e-40	%
Sma3	Various types of N-glycan biosynthesis	00513		8.62999e-40	%
Sma3	Other types of O-glycan biosynthesis	00514		8.62999e-40	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		8.62999e-40	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		8.62999e-40	%
Sma3	Lipopolysaccharide biosynthesis	00540		8.62999e-40	%
Sma3	Peptidoglycan biosynthesis	00550		8.62999e-40	%
Sma3	Glycerolipid metabolism	00561		8.62999e-40	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		8.62999e-40	%
Sma3	Sphingolipid metabolism	00600		8.62999e-40	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		8.62999e-40	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		8.62999e-40	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		8.62999e-40	%
Sma3	Carotenoid biosynthesis	00906		8.62999e-40	%
Sma3	Zeatin biosynthesis	00908		8.62999e-40	%
Sma3	Flavonoid biosynthesis	00941		8.62999e-40	%
Sma3	Anthocyanin biosynthesis	00942		8.62999e-40	%
Sma3	Flavone and flavonol biosynthesis	00944		8.62999e-40	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		8.62999e-40	%
Sma3	Betalain biosynthesis	00965		8.62999e-40	%
Sma3	Biosynthesis of type II polyketide products	01057		8.62999e-40	%
Sma3	Metabolic pathways	01100		8.62999e-40	%
Sma3	Biosynthesis of secondary metabolites	01110		8.62999e-40	%
Sma3	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	5.981e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		5.981e-09	%
Sma3	Glucomannan 4-beta-mannosyltransferase.	EC:2.4.1.32	-	4.883e-11	-

Source	Gene names
Sma3	At1g23480; At2g24630; At2g35650; At3g07330; At3g28180; At4g07960; At4g16590; At4g31590; At5g03760; At5g16190; At5g22740; B1130E07.7; B1331F11.27; CSLA1; CSLA11; CSLA2; CSLA3; CSLA5; CSLA7; CSLA9; CSLC1; CSLC10; CSLC12; CSLC2; CSLC3; CSLC4; CSLC5; CSLC6; C

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	glucomannan 4-beta-mannosyltransferase activity	GO:0047259	Molecular Function	-
Sma3	mannan synthase activity	GO:0051753	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31590.1	ATCSLC05, CSLC05, ATCSLC5, CSLC5 Cellulose-synthase-like C5 chr4:15309889-15312336 REVERSE LENGTH=692	67%
RefSeq	Arabidopsis thaliana	NP_194887.1	putative xyloglucan glycosyltransferase 5 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002302382.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A3QT94

Fln msg: your sequence is longer than subject: 700 - 530

Fln protein: MATNFEFQEWWNKEKEIHRGTSVVVKMENPNWSMVELQSPDDDFQHSDKQGRGKNARQLTWVWLLKAHRAAGCVAWLAQGLWSLLSAVKRRVTLNKNQNRGTEEDKPGKSKLYRVIRGFLLFAILMLGFEIAAYMKGWHFSRPHFDFSPSLDLQGVLHSIYSEWVFVRATYLAPPLQTLANICIVLFLIQSADRLVLAMGCLWIHIKKIKPVPQFEFPSSAADLEKGASADYPMVLVQIPMCNEMEVYQQSIAAVCNLDWPKERMLVQVLDDSDDVDVQLLIKSEVQKWQQKDINIVYKHRVVRTGYKAGNLKSAMACDYVKDYEFVAIFDADFQPSPDFLKKTVPHFKGNEDVALVQARWAFVNKDENLLTRLQNINLAFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVQCLCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSKEIGFSKKANLIFLFFLLRKLILPFYSFTLFCIILPMTMFLPEAQLPSWVICYVPAIMSFFNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKLGRSSEADLVAFMEKESHPQLEHPRHHRGVSESGLDVLNKLSEQQQKQPFKKKANRLYRKELALAFLLLTASARSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVS*

Protein Length: 701

Fln nts: TGCGTTTGATTTTGCTGGTGTGCTGTTGCAGGAGAATGTGGGATCGCGGGTTCGAACTTCGTGGAGTGTAGGGTTTTGGTTTGGAAAGAGGAGAGAAGGACGAACGAGAGGAGTAGGGAAGGGCAGTTATTGATTGCGTGCGCGCCTGGCTTATCGCATCTCGACATTCGCGGATCGAATCTCACAAACTCCAGGCGGCCTCCGCATTGTGAGATCGGCGCAGCTTCCATATAGGCGGGGCTGCCGATGGGTTCGTTTTCTATCAGTTAGAAGACGGAGGAAGCGGAGGAGGACAACGTACTTATACTATTATTGTTGTCAAAAGTCTTTCCAACTTATGCCAAAGATCCATTCTTGCATTCACTGAAGTGAAAGGATCCAGGCTTGGGCAGGGTGCTTATTCCTTTTTTTGTTCATGTGACTCCCCGGCGGGTGGGGCGTCGTTTGGTTCTTATGT_-_ATGGCAACCAATTTTGAGTTTCAAGAATGGTGGAACAAGGAGAAGGAGATCCACAGGGGCACTTCCGTGGTAGTGAAAATGGAGAATCCAAATTGGTCCATGGTGGAATTGCAAAGCCCCGACGACGATTTCCAGCACTCAGATAAGCAGGGCCGGGGCAAAAATGCCAGGCAACTTACCTGGGTTTGGCTGCTGAAAGCCCATCGCGCCGCGGGCTGTGTCGCCTGGCTCGCGCAGGGGCTATGGAGCCTTCTCTCCGCCGTAAAAAGAAGGGTCACTTTGAACAAGAATCAAAATCGTGGGACAGAGGAAGACAAACCAGGGAAAAGTAAACTGTACAGAGTCATTAGAGGGTTTTTGTTATTTGCCATTTTGATGCTAGGGTTTGAGATTGCGGCTTATATGAAAGGTTGGCACTTTAGCCGCCCTCATTTCGACTTTTCTCCGTCGCTGGACTTGCAGGGCGTTTTGCATTCCATTTATTCTGAATGGGTATTTGTTAGGGCCACTTATCTTGCCCCTCCTCTTCAGACATTGGCCAACATTTGTATTGTACTGTTTCTTATCCAGTCGGCAGATAGACTGGTGTTGGCGATGGGGTGCCTATGGATCCACATTAAAAAGATTAAGCCGGTGCCCCAATTCGAATTCCCAAGTTCAGCAGCGGATTTGGAAAAAGGTGCATCAGCAGACTATCCGATGGTTTTGGTTCAGATTCCCATGTGTAACGAAATGGAGGTTTATCAGCAATCTATTGCTGCAGTATGTAACTTAGACTGGCCAAAAGAACGGATGCTTGTGCAAGTTCTTGATGATTCGGATGATGTAGATGTGCAGTTACTTATTAAGTCAGAAGTGCAGAAATGGCAACAGAAGGATATTAACATTGTCTACAAACACCGAGTGGTCCGCACTGGCTATAAGGCTGGGAACCTTAAGTCTGCGATGGCTTGTGATTATGTGAAGGACTATGAATTTGTTGCCATTTTTGACGCAGACTTTCAGCCCAGTCCAGATTTTTTGAAAAAAACTGTGCCACATTTCAAGGGCAATGAAGATGTGGCTTTGGTGCAAGCAAGGTGGGCTTTTGTTAACAAGGATGAGAATTTATTGACAAGGTTGCAGAATATAAACTTGGCTTTCCATTTTGAGGTCGAGCAGCAGGTTAATGGTGTATTCATCAATTTCTTTGGTTTTAATGGGACTGCTGGTGTCTGGAGAATCAAAGCCCTTGAGGAGTCAGGGGGCTGGTTGGAAAGAACTACTGTGGAGGACATGGATATTGCTGTACGTGCTCACCTAAACGGATGGAAATTTATATATCTTAATGATGTTCAGTGCCTGTGTGAGCTACCGGAGTCTTATGAAGCATACCGAAAGCAGCAGCATCGATGGCATTCAGGTCCAATGCAGTTATTCCGGTTGTGTCTACCAGACATAATCCGTTCTAAGGAGATTGGTTTCTCGAAGAAGGCCAACTTAATATTCCTTTTCTTTTTGCTGCGAAAGCTCATTCTCCCTTTCTATTCATTCACTCTTTTCTGCATCATCCTTCCAATGACTATGTTTTTGCCAGAAGCTCAATTGCCATCTTGGGTCATATGCTATGTGCCGGCTATCATGTCATTCTTTAATATACTTCCTGCACCAAGATCGTTCCCTTTCATTGTTCCATATCTTCTCTTTGAAAACACAATGTCTGTAACAAAATTCAATGCCATGATCTCTGGGCTCTTTCAACTTGGCAGTGCTTATGAATGGGTGGTGACAAAAAAGTTGGGCAGATCATCTGAAGCTGATTTAGTTGCTTTTATGGAGAAGGAATCACATCCTCAATTAGAACACCCAAGGCATCATCGGGGTGTTTCAGAGTCAGGCCTTGATGTCCTCAACAAATTAAGTGAACAGCAGCAGAAACAACCCTTTAAAAAGAAAGCCAATCGGCTTTATAGGAAAGAATTGGCTTTAGCTTTTCTTCTTTTAACAGCATCTGCTAGGAGTTTATTGTCTGCTCAAGGAATTCATTTTTACTTTTTACTGTTTCAAGGGGTCTCTTTCCTCCTTGTTGGCCTTGATTTGATTGGAGAGCAGGTTAGTTGA___ATTCCACAGCATAAAGCTTGGGCAACCTCTTTACAAATTGCCTTGCCTTGTAATGTTCTTTGACACTAACTGGAGACCTGATTTTAGGCCAAGATTCAAGTGAGCACAACTTTGAATAAATGTCGCTGCAGGCCTAGAAATTTCAGGGTATGGTTTTGCAGATGTATTAAGAAGTTGGAGATATGAATATAGCACTTGATCATGCAGGGTAATATGGTGATGACGGGATCCTGAAAAGTGGTTAAGTTTAAGCCATCACCCTTTTGGGGATTCAGAGTAACAGATATTTCACCAAATATTTGTATGTTTATTATGAAAGCAGCAGCCTTGTCATTCCAACGTCAAGTGTCACATTTTCATGGCTGAGTATGTTCACAAGAAGTGATTGTGCACCAAGATAATATTATTCTGGGGTCTATTTATGACTGTGCAAATCACAATGAGAGTCTGCTCTCGCGAATTGGTAATGCCCATAGATTGTTGCCTACGCATGCCTCTGATGTATCTTAGATTTCAGTGCTCCAGCATAATTCTTTATTGTCTTCCCTATTCTTGTGATTCTGGGTCAATTTTTTTTATTGGAAACATTTTTTAATAGGTGCGAGCCTGATTAAAAGAGGTTTAGGGTGAATTGTCTACATTACGAAGTTCTTTTCTGGCCTATTTGGCAGATATATGTAGGCTTATTTATTGTTGAACATTAGAAGATGTATTCCATATTGTATATCCAATTGCACAGATGGGTTAAACCAGAAAATTTGTTGACCTCTCTTTTGCCTAACCTCCTTCACATTTCTTCCTTTGATCGTATTTGATTAAACTTTGTGTGTTCATGTTCCCCTGTGCATCCAGATTAAATTTCTAATATAAATTGTGCAATTAGCATATACT

Fln Alignment:

Contig27625___PSLDLQGVLHSIYSEWVFVRATYLAPPLQTLANICIVLFLIQSADRLVLAMGCLWIHIKKIKPVPQFEFPSSAADLEKGASADYPMVLVQIPMCNEMEVYQQSIAAVCNLDWPKERMXXXXXXXXXXXXXXXLIKSEVQKWQQKDINIVYKHRVVRTGYKAGNLKSAMACDYVKDYEFVAIFDADFQPSPDFLKKTVPHFKGNEDVALVQARWAFVNKDENLLTRLQNINLAFHFEVEQQXXXXXXXXXXXXGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVQCLCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSKEIGFSKKANXXXXXXXXXXXXXXFYSFTLFCIILPMTMFLPEAQLPSWVICYVPAIMSFFNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKLG
A3QT94_______________PSNDMTEQLALI---WRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSA-YPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKDCDYVAIFDADFQPEPDYLWRTVPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEILRNKRVTPWKKFHVIYAFFFVRKIVAHIVTFTFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
795		8		91	0.999766
972	87		12		0.992554
974			12	87	0.992554
1067	75			25	0.996473
1833		10		90	0.90298
1838	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain