SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27602

Length: 1165 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene27602 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phytol kinase 1, chloroplastic n=2 Tax=Arabidopsis RepID=PHYK1_ARATH	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Probable phytol kinase, chloroplastic	-	-	7.067e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.-.-	-	1.646e-21	-

Source	Gene names
Sma3	At5g04490; GSVIVT00018069001; H0624F09.4; LOC_Os04g57500; LOC_Os11g01450; LOC_Os12g01480; MICPUCDRAFT_5805; MICPUN_71175; OSJNBa0043A12.34; OSTLU_35668; Os04g0670700; Os11g0105800; Os12g0105500; OsI_17864; OsI_37144; OsI_37159; OsJ_16572; OsJ_34917; OsJ_3

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	phytol kinase activity	GO:0010276	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	-
Sma3	vitamin E biosynthetic process	GO:0010189	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G04490.1	VTE5 vitamin E pathway gene 5 chr5:1279867-1281587 FORWARD LENGTH=304	65%
RefSeq	Arabidopsis thaliana	NP_196069.1	phytol kinase 1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002315347.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z1

Fln msg: Overlapping hits, possible frame ERROR between 373 and 370, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 248 - 375

Fln protein: *SYQLQLQNLALVDCYGNGHGLYSPGHGGSLWFSICLRCPHQVEYIGSGILFMMSWPLFSASEDARYIAAIVPLANFLRLLIYGLKLATNEALVNAVSRKGSPEELLKGPMYYVMALIFCTIxxxRETPIGMVSLAMMCGGDGIADIIGRRFGQCKLPYNNEKSWAGSIAMFLFGFLISLGILYYFSLFGFIDLDWETTARNVAIISMAATVVESLPVTLTRFLDDNISVPSICILVGLCLFPMQSS*

Protein Length: 249

Fln nts: GTAAAGTTATCAACTGCAGCTACAGAATCTGGCCTTGGTCGACTGCTACGGCAATGGACATGGGCTGTACAGCCCTGGTCATGGTGGGAGCTTATGGTTTAGTATCTGCCTTCGATGTCCTCACCAAGTGGAATATATTGGATCAGGAATATTATTCATGATGTCCTGGCCTCTTTTCAGTGCTTCTGAAGATGCCCGTTATATTGCTGCAATTGTGCCTCTAGCAAATTTTTTAAGGCTTCTGATTTACGGACTCAAATTAGCAACAAATGAAGCGTTAGTCAATGCTGTGAGCAGAAAGGGCAGCCCTGAGGAATTATTAAAAGGACCTATGTATTACGTGATGGCTCTAATTTTCTGCACCATTxxxxxxxxxCGAGAGACCCCTATAGGAATGGTTTCTTTGGCAATGATGTGTGGCGGGGATGGTATAGCTGATATTATAGGAAGAAGGTTTGGACAATGTAAGCTTCCTTATAACAACGAGAAAAGCTGGGCAGGAAGTATAGCTATGTTTCTATTTGGCTTCTTGATTTCCCTGGGGATTTTGTACTATTTCTCTTTATTTGGATTCATTGATCTAGATTGGGAGACTACAGCTCGAAATGTTGCAATAATATCAATGGCTGCAACCGTTGTTGAATCCCTTCCGGTAACATTAACAAGGTTTTTGGATGACAACATTTCAGTTCCTTCAATATGCATACTGGTTGGGCTCTGCCTTTTTCCAATGCAAAGTTCATAAGGAACCAGTTTGAAGATATTATAATTGAAGAAATATTCGTGCAAAGTTCATACGGAACCAGTTTGAAGATATTATAGTTGGAAGTAGCATGAAGAATGCACTTTGAACGATGCTCAAAATGCGGGTTTACTGTACAAATTCTGTGCCATGTCATAAAGAACATGACAGTTCTATTCAATCGGAGCCAAAATACCAAGTTTTTCGGTGGGAGAACTGTAATGAAACCTCCAATATGATCAATAGAATCGAGAACAATAAAGATTTTATTACATAGTGGAACCTTCTATATTTATAAAAGCTATAACATTAACATGTTAATGTTAAATGTTAAGTGTGGTAGTGTGATTACACTAGATTCATCTTAATTTTTAATTGGGAGAGATTAAATCTCTTTTCATTTTAAAAGAGAGATTTGCATTCC

Fln Alignment:

Contig27602___YIGSGILFMMSWPLFSASEDARYIAAIVPLANFLRLLIYGLKLATNEALVNAVSRKGSPEELLKGPMYYVMALIFCTIFxWRETPIGMVSLAMMCXXXXXXXXXXXXXGQCKLPYNNEKSWAGSIAMXXXXXXXXXXXLYYFSLFGFIDLDWETTARNVAIISMAATVVESLPVTLTRFLDDNISVPSICILVGLCLF
D5A9Z1_______________HISIGLIFMLFWPVFSTGPQAPYLAALAPGLNIFRMIGLGLGILKNEAMVKSMSRHGNARELLKGPLYYASTITLVTVIxWRISPIGPVTISNLCAGDGFADIVGRRLGTVKLPYNKNKSFAGSFTMLLMGFIFSVGYLFYFASFGYYEVSTRMILSSL-LISIVATVVESLPISTE--LDDNLTVPLVSVLVGVLLF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
398		20		80	0.995493
468	66		33		0.997452
527	33		66		1.0
702		86		13	0.999973
713		86		13	0.999973
842		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain