SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27595

Length: 910 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27595

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	1.211e-19	-

Source	Gene names
Sma3	AT4g10580; At2g04670; At2g07660; At2g10780; F23H6.1; H0124B04.16; H0321H01.8; H0409D10.7; H0502G05.10; H0624F09.1; H0807C06-H0308C08.9; H0818H01.18; H0820C10.2; LOC_Os03g05340; LOC_Os03g05350; LOC_Os03g10000; LOC_Os03g15160; LOC_Os03g21350; LOC_Os03g23110

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	1.0e-19	46%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	2.0e-19	46%

Full-Lengther Next Prediction

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
189	33	66			0.997452
205	33		66		0.997452
216	33		66		0.997452
220	33		66		0.997452
237		33		66	1.0
255		75		25	0.996473
259		75		25	0.996473
266	25		75		0.996473
267	80	20			0.995493
275		20		80	0.995493
284		80		20	0.995493
288	20		80		0.995493
308		60		40	1.0
309	20		80		0.995493
310	20		80		0.995493
322		20		80	0.995493
335		80		20	0.995493
342		80		20	0.995493
356	40	60			1.0
357		80		20	0.995493
359	20		80		0.995493
365		60		40	1.0
367	20		80		0.995493
378		80		20	0.995493
386		80		20	0.995493
393			20	80	0.995493
404	20		60	20	0.99255
418	33		66		1.0
422		66		33	0.997452
447	25		75		0.996473
462		75		25	0.996473
476	33		66		0.997452
479		66		33	0.997452
491		66		33	0.997452
506		80		20	0.995493
512	20		80		0.995493
524		50		50	1.0
539		50		50	1.0
540			75	25	0.996473
552	25		75		0.996473
557	75	25			0.996473
558	25		75		0.996473
560		25		75	0.996473
561	75			25	0.996473
564	25			75	0.996473
566		75		25	0.996473
567		75		25	0.996473
574	25		75		0.996473
587	25	75			0.996473
591		75		25	0.996473
593		75		25	0.996473
601	25			75	0.996473
602	50		50		1.0
613			75	25	0.996473
621	50		50		1.0
633		50		50	1.0
636		25		75	0.996473
645	25	75			0.996473
650	25		75		0.996473
651		25	75		0.996473
656	25		75		0.996473
673		75		25	0.996473
679	25		75		0.996473
680	75			25	0.996473
682	75		25		0.996473
685	25		75		0.996473
686		25		75	0.996473
687	25		75		0.996473
691		75		25	0.996473
693		75		25	0.996473
700		25	75		0.996473
724	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain