SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27584

Length: 568 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene27584 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L14 [Xenopus laevis] gb\|AAH68892.1\| MGC83076 protein [Xenopus laevis]	-	-	1.0e-33	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	60 ribosomal protein L14	-	-	4.291e-16	-

Source	Gene names
Sma3	AT4G27090; At2g20450; At4g27090; BiGP; CHLREDRAFT_145271; Csf-1; GSVIVT00005649001; GSVIVT00020295001; OJ1234_B11.29; OSIGBa0140J09.10; OSJNBb0070J16.13; OSJNBb0072M01.9; OSJNOa283G08.1; Os02g0622300; Os04g0515300; OsI_08121; OsI_16636; OsJ_07573; OsJ_154

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14	IPR002784	-	0.0	-
Sma3	KOW	IPR005824	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27090.1	Ribosomal protein L14 chr4:13594104-13595187 REVERSE LENGTH=134	7.00005e-41	56%
RefSeq	Arabidopsis thaliana	NP_194439.1	60S ribosomal protein L14-2 [Arabidopsis thaliana]	8.99998e-41	56%
RefSeq	Populus trichocarpa	XP_002307658.1	predicted protein [Populus trichocarpa]	3.99931e-42	55%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
212	20		80		0.995493
353	45		54		1.0
403			81	18	0.999994
446	11		88		0.923564
472		66		33	1.0
509		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain