SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27562

Length: 980 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27562

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 n=2 Tax=Arabidopsis RepID=SD25_ARATH	-	-	1.0e-18	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	GSVIVT00001735001; PHYPADRAFT_128213; PHYPADRAFT_132817; RCOM_0664210; VITISV_009161;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327224.1	predicted protein, partial [Populus trichocarpa]	5.0e-22	49%

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
343			50	50	1.0
375		42	57		1.0
388	14		85		0.993533
389	85	14			0.993533
399	85	14			0.993533
412		14		85	0.993533
444	85		14		0.993533
445	14		85		0.993533
449	85			14	0.993533
480	66		33		1.0
503	16		83		0.994512
511	16		83		0.994512
513		83		16	0.994512
546	20			80	0.995493
548	20		80		0.995493
550	40			60	1.0
562		50	50		1.0
652	75		25		0.996473
668	66	33			0.997452
684	50	50			1.0
715	66		33		0.997452
742		11		88	0.923564
743	11		88		0.923564
745			88	11	0.923564
771		12	87		0.992554
775	87			12	0.992554
798			50	50	1.0
822	60		40		1.0
848		60		40	1.0
855		60		40	1.0
856	20		80		0.995493
857	20		80		0.995493
881	40		60		1.0
882		20		80	0.995493
884		20		80	0.995493
893			40	60	1.0
905		20		80	0.995493
908		40		60	1.0
909	20			80	0.995493
917	75			25	0.996473
921	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain