SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27508

Length: 1270 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene27508

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor lectin kinase [Arabidopsis thaliana] sp\|O80939.1\|LRK41_ARATH RecName: Full=L-type lectin-domain containing receptor kinase IV.1; Short=Arabidopsis thaliana lectin-receptor kinase e; Short=AthlecRK-e; Short=LecRK-IV.1; AltName: Full=Lectin Recepto	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Putative receptor-type protein kinase LRK1	-	-	3.066e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	3.189e-06	-
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	5.138e-12	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; AT4g04960; AT4g29050; At1g15530; At1g70110; At1g70130; At2g37710; At2g43690; At2g43700; At3g08870; At3g45410; At3g45420; At3g45430; At3g53810; At3g59700; At3g59750; At4g02410; At4g02420; At4g04960; At4g29050; At5g01540; At5g01550; At

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	focal adhesion assembly	GO:0048041	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR001899	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37710.1	RLK receptor lectin kinase chr2:15814934-15816961 REVERSE LENGTH=675	54%
RefSeq	Arabidopsis thaliana	NP_181307.1	receptor lectin kinase [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002309078.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 63 aas, putative chimeric sequence, your sequence is shorter than subject: 271 - 704

Fln protein: SGHEVAVKCISPDFAEGMKGFVAEVSSMGRLQHRNLVQVLGWCRKQKQLFIVSDYMPNGSLDKLIFGNPATVLPWPQRYAILKGVAAGLLFLHEEWERMVIHRDIKSSNVLLDSELNGRLCDFALAPLYDYCQNPQKAHVVGTLGYIAPEFLHTGSATASSDVFSFGVLLLEVACGRRQMDPLEDPEQMILTDWVRVLYKDGRLVEAFDPNLGKRYDVVEMDRVLKLGLLCCHREPESRPTIRQVCQILEGEATLPDMRTASLNMGILGR*

Protein Length: 272

Fln nts: AGCGGCCATGAAGTCGCAGTGAAATGCATATCGCCGGATTTCGCGGAGGGAATGAAGGGGTTCGTAGCAGAGGTCTCGAGCATGGGGCGCTTACAGCACCGTAACCTGGTTCAAGTCCTGGGCTGGTGCCGGAAACAAAAGCAGCTATTCATCGTTTCCGACTACATGCCCAACGGCAGTCTTGATAAACTCATATTCGGGAACCCAGCAACAGTCCTGCCGTGGCCTCAGCGATATGCGATCCTAAAGGGCGTGGCCGCTGGGTTGCTGTTTCTGCACGAAGAATGGGAGAGGATGGTCATCCACCGAGACATCAAGTCAAGCAACGTGCTGCTGGATTCGGAGCTCAACGGGCGACTGTGTGACTTTGCCCTCGCTCCGCTGTATGATTACTGCCAGAATCCGCAGAAGGCTCATGTGGTAGGAACGCTCGGGTACATAGCACCGGAGTTCCTGCACACGGGGAGTGCCACTGCCAGCTCGGACGTGTTCAGCTTCGGGGTTCTGTTGTTGGAGGTGGCTTGTGGAAGGAGGCAGATGGATCCGTTGGAGGACCCCGAGCAGATGATTTTGACGGACTGGGTGAGGGTCCTGTACAAGGATGGGAGGCTCGTGGAGGCTTTCGATCCAAACCTGGGCAAGCGGTATGATGTGGTGGAGATGGATAGGGTGCTGAAATTGGGGTTGTTGTGCTGTCATCGAGAGCCGGAGAGCAGACCGACAATACGCCAGGTTTGTCAAATACTTGAGGGTGAAGCTACTCTTCCTGACATGCGCACGGCTTCGTTAAACATGGGTATTCTGGGTCGTTAA___CAAATGGTCCTTGTGATATTATGGGTCGTTATCCCTGAAGAGCCCTATTTAAGTCGGCAGGTAATAATTTTCAGGCGAAATGGCCGAACACCATCACATTATTAGGTCACACCGTGAAATATTTGTGGACGTAGTGCAGATGGGATAGCAATAAAGTTAAATACATAACTGGGTTACAAATTCCCAAGTATTCTAAAGTTTAGATCAAAATTAGATTGAAGGGATGGCGGCCACCTGCTATGGTGAAAGTTAAGGATAGCCGCCAAGCGCCGGCTCCACAAGCCAGCTCGAAATTTTCAAGGCGTTGATTGTTGAACGACTCTTAAATAAAATAAACTAAATATTTTTATGTATCTCTCTCATGTATGGTCTAGATTATTTTTGAATAATTGGACAACCTGTTTCCCACATGGGCAAAGTTGTGAATATCTACCACTCAGCGTTGAAGATGCAGACC

Fln Alignment:

Contig27508___SGHEVAVKCISPDFAEGMKGFVAEVSSMGRLQHRNLVQVLGWCRKQKQLFIVSDYMPNGSLDKLIFGNPATVLPWPQRYAILKGVAAGLLFLHEEWERMVIHRDIKSSNVLLDSELNGRLCDFALAPLYDYCQNPQKAHVVGTLGYIAPEFLHTGSATASSDVFSFGVLLLEVACGRRQMDPLEDPEQMILTDWVRVLYKDGRLVEAFDPNLGKRYDVVEMDRVLKLGLLCCHREPESRPTIRQVCQILEGEATLPDMRTASLNMGILG
B8LLJ6_______________SGQEVAVKCITKEFTEGMKGFVAEISSMGRLQHRNLVQLRGWCRRHMQLFIVYDYMPNGSLDKLIFGNPTTVLPWHRRYVILKGVAAGLLYLHEQWEKRVIHRDIKSSNVLLDSELNGRLGDFGLARLYDHSEIPQTTHVVGTLGYIAPELIHTGKATPSSDVFSFGVLLLEVTCGKRPADPLNDAKRMVLVEWVWKLHTEGRLVDASDPNLGKAYDMCQIEKVLKLGLLCCNPEPQSRLGMRHVCQILEGEAPLPDLRMASFNACIMG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
996		40	60		1.0
1053	53		46		1.0
1102		30		70	1.0
1109			25	75	1.0
1121	25		75		1.0
1167		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain