SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27505

Length: 2686 nt

UniGene Fasta

>sp_v3.0_unigene27505
AGGTTATTGTCCAAGGGCGAAAACCGTGCGCGTAACCGTGCGGTGGGGATTTGTGGGTCGACGGAGGATTGAAGGGGGGAGGAGGATGGCGTAATGGGCTCATCAGATCCACCCAGAGGAACCTCATACTGCATTTGATCGCTCGAGCTGAGGGTATTCAGGTCGATTGGTATCGGGAATAGGGTTTTCTGGGGGCAAAAAACGAAGGATTTTGGTCCCAGAACGAGGAGTTTTTGTGCATTTAAGTACAGGGGAAGCTCGGGCCTCTGTGCTTGTTGTTTTGATTCGTTTTAACGGCGGAAATCCGTCCAGAATAGGACTATAGGCTGTAACATCGTTTGTGAGTAGAGTTTTTGGGAGCAGTTTTGAGGTGTTTAGGTCTGTTTAGAGATACCCACTTTAGAAAAAAAAATTAGAAAAAAAAATAAATGTTTGGGGGATTGGTGTGGATAGCACAGAGGTATGTTCAGGGGATTCTGTTTAAAGATGCCCATTTGAAATAGCTCAAGTGTGGTTGTGAGAGAATTCTGTTGAGATTAGTGATCTGGAGATGCCCGTTTGAGAACGACTGTGGTATGCGCAGAAAATATATATATATAATATATATCGCGTTCGTTGATCTGAAGGAGAGCCAAGGAACAAAGAATTGGAGGGAAAATTGCGAGTCATGTTGGAGTCGGAGAGTTGCATTATGTCCGGTTTACCCGAACAAGAGCTGGTGAGGAAGAAGCATTACCAGCCGGCAGCATGTATCGAGGACTTAGACCACAATGAGAAAATGGAGAAAAGAATGATGTTCCAGGAGTCTCCGGGATTCGATCATAAGAAGATCAGGACTTCTGTGGACGTGAGGAAGGGTATTCTGAAGAGGGTCAGGTGCCAAGGTGAGCAATACGATGCTGAAAACCAAGGTGAGGGAACCCATGATTCAATGATTCCTGGTCTTCATGATGACTTAGGTTTGGATTGCCTTGCATTGACTTCTAGATCAGATTATGGATCATTGGCTTGTTTAAACAAGAGGTTTAAATACCTTGTCAGATGCGGTTATCTTTATCGCCTGAGAAGGAGGCTCGGCATAGTAGAGCAATGGATTTACCTGATGTGTAATTTGATAGGGTGGGAGGCTTTTGATCCCTATAGACAGCGGTGGATGAGGTTGCCTAGGATTCCATCTGATGAATGTTTTAATTATGCTGATAAGGAATCTCTAGCAGTTGGGACAGAACTGCTTGTTTTCGGCAGAGAAGTGTTTGGATTTGCCATATGGAGGTATAGCTTATTGACCCATAGTTGGGCCAGAGGACCAGGGATGGCTAGTCCTCGTTGTTTATTCGGTTCAAGCAGCTACGGAGAGATAGCCATAGTTGCAGGTGGAAGTGATCAGAATGGTACTGTGCTCAAGTCTGCCGAGCTTTATAATTCCGAGCAAGGCACTTGGGAAACTCTGCCTGACATGCATTCTCCACGGAAACTCTGTTCAGGTTTTTTCATGGACGGGAAGTTTTATGTCATAGGAGGCATGTCAAGCCCCACAGTTTCCCTGACATGTGGAGAAGAGTATAATCTTCAAACGAGGACTTGGAGAAGGATACGTGACATGTTCCCTGGAGGGAACAGAGCGACACATGCTCCCCCATTGGTTGCTGTAGTCAATAATCAACTATATGCAGTTGAGTATTCTAGAAATGAAGTTAAGAAATATAACAAGGAGAATAACACATGGAGTGTTGTGGGTAGGTTGCCTGTGAGGGCAGATTCAACGAATGGTTGGGGTCTAGCATTCAAGGCCTGTGGTAATGAGATTATTGTAATTGGTGGGCAGAGAGGACCTGAAGGTGAATGCATTGTAGTGAATTCATGGAGGCCTACCTCTGATGCTGGGAGGCCAATAGACTGGAAAGTCCTTGCAGTCAAGCGGCACGCTGGAGTGTTTGTTTATAACTGTGCAGTAATGAGTTGCTGAGTTGGTCATGATTCTTGGTCTCGCCAATCTGTTGCTGTTCTGTATTTTTCGAAGTTTAGAATTGTAAGGGCTTGCAATCTCTTGCAAGGATTTACATTGTTGGTAGATAACTGGTAAGATTTTCATCTTTGTGTTAATGACAATACTGAGATCAGCTCAGCCAAGGAACGGCCACAAGCTCAGAAAATTAACACTGCTTTAAGCTGCTTATTTCTCCACCGTTTCTCGAGATTGACGAGGCACCTTCCTTTCAAGGGTATTCTCCACTAGAACACTTCACTCTGCTAATTCTGTATTTTTTGATAAGTGACTACTCTGTTCTCTCTGCTTGTGGAAAATACAGAAAGCACAAGATAAGAGGTAGTATAGTAAGGGTTGATCATCTTTGCCCTCCATCTAAGAGGCTGCTCTAATGTTCTGTCAAGAGAAATCCCGTGCAAATATTAAATGAAAAAAATAGGGCTCTTATTTTTAGCCATATCAATACTATTACTCTGGCTTTTTCTGTGATACTTTTTTAAATCACAGAATTGATTTCAAATCAGGCTCATATCATCTATGTGGGGTTTCTTTATTTCTATTAATTAAAGTTACCGAATAAAGAAGTTCTTAGCATTACAAAATTGTAGCCCAACAGCCCAATTGGATGTTACATTTACTCTCACCTTTAATGGTTTCAATTGGTCTCTGACCACCCATGGATGCAACTTAAACTGAAGA

Ace file of the UniGene sp_v3.0_unigene27505

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SWC2_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60570.1	Galactose oxidase/kelch repeat superfamily protein chr5:24348713-24349894 FORWARD LENGTH=393	59%
RefSeq	Arabidopsis thaliana	NP_200865.1	F-box/kelch-repeat protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002325447.1	f-box family protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg:

Fln protein: MLESESCIMSGLPEQELVRKKHYQPAACIEDLDHNEKMEKRMMFQESPGFDHKKIRTSVDVRKGILKRVRCQGEQYDAENQGEGTHDSMIPGLHDDLGLDCLALTSRSDYGSLACLNKRFKYLVRCGYLYRLRRRLGIVEQWIYLMCNLIGWEAFDPYRQRWMRLPRIPSDECFNYADKESLAVGTELLVFGREVFGFAIWRYSLLTHSWARGPGMASPRCLFGSSSYGEIAIVAGGSDQNGTVLKSAELYNSEQGTWETLPDMHSPRKLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLQTRTWRRIRDMFPGGNRATHAPPLVAVVNNQLYAVEYSRNEVKKYNKENNTWSVVGRLPVRADSTNGWGLAFKACGNEIIVIGGQRGPEGECIVVNSWRPTSDAGRPIDWKVLAVKRHAGVFVYNCAVMSC*

Protein Length: 434

Fln nts: AGGTTATTGTCCAAGGGCGAAAACCGTGCGCGTAACCGTGCGGTGGGGATTTGTGGGTCGACGGAGGATTGAAGGGGGGAGGAGGATGGCGTAATGGGCTCATCAGATCCACCCAGAGGAACCTCATACTGCATTTGATCGCTCGAGCTGAGGGTATTCAGGTCGATTGGTATCGGGAATAGGGTTTTCTGGGGGCAAAAAACGAAGGATTTTGGTCCCAGAACGAGGAGTTTTTGTGCATTTAAGTACAGGGGAAGCTCGGGCCTCTGTGCTTGTTGTTTTGATTCGTTTTAACGGCGGAAATCCGTCCAGAATAGGACTATAGGCTGTAACATCGTTTGTGAGTAGAGTTTTTGGGAGCAGTTTTGAGGTGTTTAGGTCTGTTTAGAGATACCCACTTTAGAAAAAAAAATTAGAAAAAAAAATAAATGTTTGGGGGATTGGTGTGGATAGCACAGAGGTATGTTCAGGGGATTCTGTTTAAAGATGCCCATTTGAAATAGCTCAAGTGTGGTTGTGAGAGAATTCTGTTGAGATTAGTGATCTGGAGATGCCCGTTTGAGAACGACTGTGGTATGCGCAGAAAATATATATATATAATATATATCGCGTTCGTTGATCTGAAGGAGAGCCAAGGAACAAAGAATTGGAGGGAAAATTGCGAGTC_-_ATGTTGGAGTCGGAGAGTTGCATTATGTCCGGTTTACCCGAACAAGAGCTGGTGAGGAAGAAGCATTACCAGCCGGCAGCATGTATCGAGGACTTAGACCACAATGAGAAAATGGAGAAAAGAATGATGTTCCAGGAGTCTCCGGGATTCGATCATAAGAAGATCAGGACTTCTGTGGACGTGAGGAAGGGTATTCTGAAGAGGGTCAGGTGCCAAGGTGAGCAATACGATGCTGAAAACCAAGGTGAGGGAACCCATGATTCAATGATTCCTGGTCTTCATGATGACTTAGGTTTGGATTGCCTTGCATTGACTTCTAGATCAGATTATGGATCATTGGCTTGTTTAAACAAGAGGTTTAAATACCTTGTCAGATGCGGTTATCTTTATCGCCTGAGAAGGAGGCTCGGCATAGTAGAGCAATGGATTTACCTGATGTGTAATTTGATAGGGTGGGAGGCTTTTGATCCCTATAGACAGCGGTGGATGAGGTTGCCTAGGATTCCATCTGATGAATGTTTTAATTATGCTGATAAGGAATCTCTAGCAGTTGGGACAGAACTGCTTGTTTTCGGCAGAGAAGTGTTTGGATTTGCCATATGGAGGTATAGCTTATTGACCCATAGTTGGGCCAGAGGACCAGGGATGGCTAGTCCTCGTTGTTTATTCGGTTCAAGCAGCTACGGAGAGATAGCCATAGTTGCAGGTGGAAGTGATCAGAATGGTACTGTGCTCAAGTCTGCCGAGCTTTATAATTCCGAGCAAGGCACTTGGGAAACTCTGCCTGACATGCATTCTCCACGGAAACTCTGTTCAGGTTTTTTCATGGACGGGAAGTTTTATGTCATAGGAGGCATGTCAAGCCCCACAGTTTCCCTGACATGTGGAGAAGAGTATAATCTTCAAACGAGGACTTGGAGAAGGATACGTGACATGTTCCCTGGAGGGAACAGAGCGACACATGCTCCCCCATTGGTTGCTGTAGTCAATAATCAACTATATGCAGTTGAGTATTCTAGAAATGAAGTTAAGAAATATAACAAGGAGAATAACACATGGAGTGTTGTGGGTAGGTTGCCTGTGAGGGCAGATTCAACGAATGGTTGGGGTCTAGCATTCAAGGCCTGTGGTAATGAGATTATTGTAATTGGTGGGCAGAGAGGACCTGAAGGTGAATGCATTGTAGTGAATTCATGGAGGCCTACCTCTGATGCTGGGAGGCCAATAGACTGGAAAGTCCTTGCAGTCAAGCGGCACGCTGGAGTGTTTGTTTATAACTGTGCAGTAATGAGTTGCTGA___GTTGGTCATGATTCTTGGTCTCGCCAATCTGTTGCTGTTCTGTATTTTTCGAAGTTTAGAATTGTAAGGGCTTGCAATCTCTTGCAAGGATTTACATTGTTGGTAGATAACTGGTAAGATTTTCATCTTTGTGTTAATGACAATACTGAGATCAGCTCAGCCAAGGAACGGCCACAAGCTCAGAAAATTAACACTGCTTTAAGCTGCTTATTTCTCCACCGTTTCTCGAGATTGACGAGGCACCTTCCTTTCAAGGGTATTCTCCACTAGAACACTTCACTCTGCTAATTCTGTATTTTTTGATAAGTGACTACTCTGTTCTCTCTGCTTGTGGAAAATACAGAAAGCACAAGATAAGAGGTAGTATAGTAAGGGTTGATCATCTTTGCCCTCCATCTAAGAGGCTGCTCTAATGTTCTGTCAAGAGAAATCCCGTGCAAATATTAAATGAAAAAAATAGGGCTCTTATTTTTAGCCATATCAATACTATTACTCTGGCTTTTTCTGTGATACTTTTTTAAATCACAGAATTGATTTCAAATCAGGCTCATATCATCTATGTGGGGTTTCTTTATTTCTATTAATTAAAGTTACCGAATAAAGAAGTTCTTAGCATTACAAAATTGTAGCCCAACAGCCCAATTGGATGTTACATTTACTCTCACCTTTAATGGTTTCAATTGGTCTCTGACCACCCATGGATGCAACTTAAACTGAAGA

Fln Alignment:

Contig27505___MLESESCIMSGLPEQELVRKKHYQPAACIEDLDHNEKMEKRMMFQESPGFDHKKIRTSVDVRKGILKRVRCQGEQYDAENQGEGTHDSMIPGLHDDLGLDCLALTSRSDYGSLACLNKRFKXXXXXXXXXXXXXXXGIVEQWIYLMCNLIGWEAFDPYRQRWMRLPRIPSDECFNYADKESLAVGTELLVFGREVFGFAIWRYSLLTHSWARGPGMASPRCLFGSSSYGEIAIVAGGSDQNGTVLKSAELYNSEQGTWETLPDMHSPRKLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLQTRTWRRIRDMFPGGNRATHAPPLVAVVNNQLYAVEYSRNEVKKYNKENNTWSVVGRLPVRADSTNGWGLAFKACGNEIIVIGGQRGPEGECIVVNSWRPTSDAGRPIDWKVLAVKRHAGVFVYNCAVMSC
B8LQD3_______________MLESQSCLMSSSPEQELVKKKHYLPAACMVDLHHNEKIEKKMMFQEPPGFDHKKIRTSVDVRKGILKRVRCQGEQYDAENQGEGTHDSMIPGLHDDLGLDCLALTSRSDYGSLACLNKRFNYLVRSGYLYHLRRQLGIVEQWIYLMCNLIGWEAFDPYRERWMRLHRIPSDECFNYADKESLAVGTELLVFGREVFGFAIWRYSLLTHSWARGPGMASPRCLFGSSSYGEIAIVAGGSDQNGTVLKSAELYNSELGTWETLPDMHSPRKLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLQTRTWRRIRDMFPGGNRATHAPPLVAVVNNQLYAVEYSRNEVKKYNKENNTWSVVGRLPVRADSTNGWGLAFKACGNEIIVIGGQRGPEGECIVLNSWRPSPEAGRPIEWKVLAVKWHAGVFVYNCAVMSC

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
404	83			16	0.994512
1596		12		87	0.992554
1597	87			12	0.992554
1598		75	12	12	0.975346
1599			85	14	0.993533
1936	88		11		0.923564
2001		16		83	0.994512
2558	27		72		1.0
2587	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
587	599	AT AT AT AT AT AT A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain