SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27459

Length: 809 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene27459 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase 16 kDa proteolipid subunit, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MUR2_PHYIT	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	PHATRDRAFT_21882; PHATRDRAFT_29011;

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34720.1	AVA-P1, VHA-C1, ATVHA-C1 ATPase, F0/V0 complex, subunit C protein chr4:16568223-16569165 REVERSE LENGTH=164	69%
RefSeq	Arabidopsis thaliana	NP_195603.1	V-type H+-transporting ATPase 16kDa proteolipid subunit [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002306142.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
197		50		50	1.0
314	33	66			1.0
338		75	25		0.996473
500	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain