SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene27218

Length: 392 nt

UniGene Fasta

>sp_v3.0_unigene27218
GAGAGCTTGCCCCACAAGACCCTGACTGGTACTACGTACGTGCAGCTTCGGTGGCTCGTAAAATTTATCTCCATGGTGGGCTTGGTGTGGGTAGTTTGAGAAAAGTTTACGGTGGCAACAAAAGAAGAGGACCTCGTCCTGAAAGATTCCAAAAAGCATCTGGTTCCATTCTTCGTCATGTCCTCCAAAATTTAGAAAAAATTGGTGTAGTTGAAAAATCTGCCAAAGGTGGTCGAAGAATCAGCCAAGAGGGACAGAGGGATTTGGACAGAATTGCCGGAGCTGCTGCCAAAACTGCCAGACGATCACAACAAACACAAATAGTCAAATTCTGAAAACAATATATGTGTTTGAGATTGCATATTTGCAAGTATAAACTTTGTTAAATTAGG

Ace file of the UniGene sp_v3.0_unigene27218

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S19-1 n=8 Tax=Arabidopsis RepID=RS191_ARATH	-	-	2.0e-31	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	40S ribosomal protein S19	-	-	1.268e-13	-

Source	Gene names
Sma3	At3g02080; At5g15520; At5g61170; CHLREDRAFT_141798; CT189; F1C9.13; GSVIVT00016251001; GSVIVT00030059001; LOC_Os03g31090; LOC_Os03g31134; MICPUCDRAFT_49693; MICPUN_107171; OSTLU_44019; Os03g0424500; Os03g0424800; Os03g31090; Os03g31130; OsI_12120; OsI_121

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S19e	IPR001266	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Ribosomal protein S19e, conserved site	IPR018277	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G15520.1	Ribosomal protein S19e family protein chr5:5037242-5038136 REVERSE LENGTH=143	6.00036e-42	65%
RefSeq	Arabidopsis thaliana	NP_197056.1	40S ribosomal protein S19-2 [Arabidopsis thaliana]	8.00001e-42	65%
RefSeq	Populus trichocarpa	XP_002323893.1	predicted protein [Populus trichocarpa]	4.00001e-41	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL45

Fln msg: your sequence is shorter than subject: 111 - 144

Fln protein: ELAPQDPDWYYVRAASVARKIYLHGGLGVGSLRKVYGGNKRRGPRPERFQKASGSILRHVLQNLEKIGVVEKSAKGGRRISQEGQRDLDRIAGAAAKTARRSQQTQIVKF*

Protein Length: 112

Fln nts: GAGAGCTTGCCCCACAAGACCCTGACTGGTACTACGTACGTGCAGCTTCGGTGGCTCGTAAAATTTATCTCCATGGTGGGCTTGGTGTGGGTAGTTTGAGAAAAGTTTACGGTGGCAACAAAAGAAGAGGACCTCGTCCTGAAAGATTCCAAAAAGCATCTGGTTCCATTCTTCGTCATGTCCTCCAAAATTTAGAAAAAATTGGTGTAGTTGAAAAATCTGCCAAAGGTGGTCGAAGAATCAGCCAAGAGGGACAGAGGGATTTGGACAGAATTGCCGGAGCTGCTGCCAAAACTGCCAGACGATCACAACAAACACAAATAGTCAAATTCTGA___AAACAATATATGTGTTTGAGATTGCATATTTGCAAGTATAAACTTTGTTAAATTAGG

Fln Alignment:

Contig27218___ELAPQDPDWYYVRAASVARKIYLHGGLGVGSLRKVYGGNKRRGPRPERFQKASGSILRHVLQNLEKIGVVEKSAKGGRRISQEGQRDLDRIAGAAAKTA
A9NL45_______________ELAPYDPDWYYVRAASMARKIYLRHGIGVGAFRKIYGGSQRNGARPPHFCKSSGSVARHILQQLEKMNIIEMDPNGGRRITSSGQRDLDQVAGRVVVVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain